Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4292 ATGGAGGGTAGTTCTAGTGTGATGATGGGTTTTGGAGAGAACAATAACAATAGTGGGATTTATCCTATGACCATGATGCCTGCTTTCATGAATTCTAGCACTCTTAACAACCCTAATCAAGACACAACAAACAGTTTCTTCTTCCCCATGCCTTGCACTAGTAATCATGATCCTAACCCTAACAACCTCAACACCAACACCAACAACAACACAGGGTTAGGGCAATATTTCATGGAGGATCAGATCAACCACAACATCAACAAAGATGGAAGCTCTTCTACTTCTGCTGCTGCTGTGAAGGCCAAGATCATGGCTCATCCTCACTATCAACGTCTTCTAGCAGCCTACGTCAATTGTCAAAAGATTGGGGCTCCGCCTGAAGTAGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCGGCGGCGATGGCCGGTGTTTCAGGTGGGACAGCATGCATCGGTGAGGATCCGTCGTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATAAAGTACCAGCAAGAGCTCTCTAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGAATCGAGTGCCAGCTCAACTCTCTTGCCATTTCTTCTGATTTTGCTTGTGCTGAAGCTACCGATAGGATTGGATCATCAGAGAATGTTGATCTACACAATAACATGATAGATCCCCAGGTAGAGGACCAAGAACTGAAGGTTCAACTTCTTCACAAGTACAGTGGATACCTAGGCAATTTGAAGCAGGAATTCATGAAGAAGAGAAAAAAAGGCAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCGGAATCACAGAAGCTTGCGCTTGCAGAGGCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAGAGGAAACGGCACTGGAAACCTTCTGATGACATGCAATTTATGGTGATGGAACCAAGCCACCCACACCAGTACATGAACAGTACTGTTCTGGGCAATCACTTTCCCATGGATCTCTCCCACACAATGCTCTGA 1059 0.4523 MEGSSSVMMGFGENNNNSGIYPMTMMPAFMNSSTLNNPNQDTTNSFFFPMPCTSNHDPNPNNLNTNTNNNTGLGQYFMEDQINHNINKDGSSSTSAAAVKAKIMAHPHYQRLLAAYVNCQKIGAPPEVVARLEEACASAAAMAGVSGGTACIGEDPSLDQFMEAYCEMLIKYQQELSKPFKEAMLFLQRIECQLNSLAISSDFACAEATDRIGSSENVDLHNNMIDPQVEDQELKVQLLHKYSGYLGNLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAEATGLDQKQINNWFINQRKRHWKPSDDMQFMVMEPSHPHQYMNSTVLGNHFPMDLSHTML* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4292 352 SMART ELK_2 233 254 IPR005539 GO:0003677
Lja4g4292 352 Gene3D - 258 320 - -
Lja4g4292 352 Pfam KNOX1 domain 98 137 IPR005540 GO:0003677|GO:0005634
Lja4g4292 352 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 341 - -
Lja4g4292 352 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Lja4g4292 352 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
Lja4g4292 352 SMART HOX_1 255 320 IPR001356 GO:0003677
Lja4g4292 352 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 341 - -
Lja4g4292 352 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Lja4g4292 352 Pfam KNOX2 domain 151 197 IPR005541 GO:0003677|GO:0005634
Lja4g4292 352 CDD homeodomain 265 317 IPR001356 GO:0003677
Lja4g4292 352 Pfam ELK domain 233 254 IPR005539 GO:0003677
Lja4g4292 352 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981|GO:0006355
Lja4g4292 352 SUPERFAMILY Homeodomain-like 255 329 IPR009057 -
Lja4g4292 352 SMART KNOX2_2 148 199 IPR005541 GO:0003677|GO:0005634
Lja4g4292 352 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4292 Lja-Chr4 76558854 76562471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4292 99 352 Homeobox Transcription Factor Family AT1G62360 75.573 1.59e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja4g4292 KNOX2 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4292 - - gmx:100127401 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4292 4 76558854 76562471 Lja4g4292 4 76558854 76562471 ECH
Lja4g4292 4 76558854 76562471 Lja6g2460 6 53502782 53508300 PCT