Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4282 ATGGAGGTTGCAGTTTCAAGACAAGAACATTCGAACTCGAATCAACGTGCTGAGGATGATAAGATGCAGTTCTCGAGATGCTCGAAACCTTTTGGAGCTGCATCAAGTAGGAAGGCTAAGGGGATTGGTGAATATGGTAGTAATAAGAGGCTAAAACTAGAAGGGGAAGGAGGAAGTGTGGTGTACTCAAAGAAGGTTACTGCAGTAAGAATGGATGCTACAGTTGCGAAGCGAGAACAGTCAAGTCAGCATATTGGAATTTCAAACAGGAGAAAGGGTCGAGAAATTCAGAAAGGGAAAGAAGGCATTCTGACATGTTCAAAGGTGACCCCCAGACTTCCATCTAAGAAAAGAGATGAGTCCAAGAAGCGTACTACCTCAAGCAAGAAAAGGAAATTTTATGAAGATTATGAAGAAGATGATGAAGAAGGTGAAGTTGAAGATGAAGATGACGATGAAGTAGATGGAGAAGCACTTTTTCTTTCAAGGACAAATGCCAGGAGGAGAGCTAGTACAACGGATAACATGGGCACTCAACAAAAACCTCGGATATGTCACCAGTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCGAAAATGTACTGCATGCGGTGCCTCCATCAATGGTATCCTGATATGTCAATAGAAGAAGTTGCTGGAAGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGCTTGTTTGCATTCAAAAGGGGTGATTAAGACATCTGACAATGACATCGCCAACTCCGATAGAGCTCAGTATCTGCACTATATGATTAACCTACTCCTTCCATATCTGAAACAAATTTGCCATGAACAAACACAAGAGAAAGAGATTGAAGCTAAAATACAAGGAATATCTTCTTGTGAGATTGACATACAACAAAGTTTGTGTGTTGACGGTGAACGTGTATATTGTGACCATTGTGCTACTTCAATTGTTGATCTTCATCGAAGCTGCCCCAAGTGTTCGTTTGAACTATGCCTTAGTTGTTGCCGAGAAATACGTGATGGAAGCATTACACCCCGGGCTGATATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCACGGTGGTGACCCTCTACCAGTGTCTTGTCATTTAGAGGCTTCAGATGACCATATTGAGCTATCTTCTCAGTGGAATGCCAAGATTGATGGAAGTGTCAGTTGTGCACCAAAGGAGATGGGGGGTTGTGGTAGCTCTGTGTTGGAGCTTAGGCGCATTCTCCCACAAGGGTGGATGTCAGACTTGGAGGCCAAAGCTTGCAGTATGCTGCCAATATCAGAAATTGAACAAACAACTCTTCATCAGAAAGAAGCGGTATCGAGCTCCAACTATGTGAGAAAAGCAGCCTTTAGAGATGGCACAAATGGCAATAGCATACACTGTCCAGAGTCAGGAGACATTTCCAAAGAAGGGCTATTGCTTTTTCAAAAACATTGGGCTAGTGGTGAACCCATCATAGTTCGAGATGTTCTTAAACAGGGGACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTATTGTGTGAAAATAAAGTTGCAGAAATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCCTGGCTAACTGTGAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATATAGAGGGAAGAACGTATGAAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCACTGCGACGAGTTTATTCGCTCCTTGCCATTTCAAGAATATACTGATCCTCGGGCTGGAATTCTTAATCTTGCTGTGAAGTTGCCAGCAAATGTCCTAAAACCTGACATGGGGCCAAAAACATATATTGCTTATGGGTTTAAAAAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTAAATATTTTGACCCATACAGCTGAGGTGATATTAACCGACGAGCAGCTTTCCACTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGATAGAGAACTCCTAAATGGTCAATCTTGCAAGGACAGCAGAGAATATATAGAAAAGAAGGAAGTCTTAGACTCCAAAGAAAATGAATCAATAGAAACAGGTTGTGCATTATGGGACATATTTCGGAGAGAGGATACTGAAAAGTTAGAAACGTATCTAAGAAAGCACTCAACTGAATTTAGACATGCTTATTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTGGGAGCACAAGAAGAAGCTAAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTCAAACAGAATCTTGGGGAAGCAGTATTTATTCCTGCTGGATGCCCACACCAAGTGAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTTTATGCCGTGGATCAAGCTATCAAGGACTTAACAGATTTATTGAACCTTTCTTGA 2619 0.4166 MEVAVSRQEHSNSNQRAEDDKMQFSRCSKPFGAASSRKAKGIGEYGSNKRLKLEGEGGSVVYSKKVTAVRMDATVAKREQSSQHIGISNRRKGREIQKGKEGILTCSKVTPRLPSKKRDESKKRTTSSKKRKFYEDYEEDDEEGEVEDEDDDEVDGEALFLSRTNARRRASTTDNMGTQQKPRICHQCMKKERTAFVPCTKCPKMYCMRCLHQWYPDMSIEEVAGSCPFCRKNCNCNACLHSKGVIKTSDNDIANSDRAQYLHYMINLLLPYLKQICHEQTQEKEIEAKIQGISSCEIDIQQSLCVDGERVYCDHCATSIVDLHRSCPKCSFELCLSCCREIRDGSITPRADMKFQYVNRGYDYMHGGDPLPVSCHLEASDDHIELSSQWNAKIDGSVSCAPKEMGGCGSSVLELRRILPQGWMSDLEAKACSMLPISEIEQTTLHQKEAVSSSNYVRKAAFRDGTNGNSIHCPESGDISKEGLLLFQKHWASGEPIIVRDVLKQGTGLSWEPMVMWRVLCENKVAEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEGRTYENLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPANVLKPDMGPKTYIAYGFKKELGRGDSVTKLHCDMSDAVNILTHTAEVILTDEQLSTISKLKEAHKAQDDRELLNGQSCKDSREYIEKKEVLDSKENESIETGCALWDIFRREDTEKLETYLRKHSTEFRHAYCSPVEQVVHPIHDQCFYLTWEHKKKLKEEFGVEPWTFKQNLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLTDLLNLS* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4282 872 ProSiteProfiles JmjC domain profile. 605 835 IPR003347 -
Lja4g4282 872 Gene3D Cupin 475 844 - -
Lja4g4282 872 SMART cupin_9 586 835 IPR003347 -
Lja4g4282 872 CDD cupin_RmlC-like 759 807 - -
Lja4g4282 872 ProSiteProfiles Zinc finger RING-type profile. 185 231 IPR001841 -
Lja4g4282 872 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 34 870 IPR045109 GO:0032454|GO:0033169
Lja4g4282 872 SUPERFAMILY Clavaminate synthase-like 486 859 - -
Lja4g4282 872 Pfam JmjC domain, hydroxylase 719 818 IPR003347 -
Lja4g4282 872 MobiDBLite consensus disorder prediction 84 101 - -
Lja4g4282 872 MobiDBLite consensus disorder prediction 138 154 - -
Lja4g4282 872 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 180 249 IPR018866 -
Lja4g4282 872 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 34 870 - -
Lja4g4282 872 MobiDBLite consensus disorder prediction 75 154 - -
Lja4g4282 872 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4282 Lja-Chr4 76453587 76459039 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja4g4282 JmjC 1.7e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4282 K15601 K21989 gmx:100797860 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4282 4 76453587 76459039 Lja4g4282 4 76453587 76459039 ECH
Lja4g4282 4 76453587 76459039 Lja6g2454 6 53449339 53453693 PCT