Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4279 ATGGCTACCTCAACCACACTCCTCTTACTTTCATTCTTTGTTCTCCACCTTGCATTATTGGTTAATGCATATGAATATTCCACAGAGAAGTACTACTACAACAATCCTGAACCTGTTTCTAAAAAACCATTCCTTAATGTGATAGATTCTTGTTGGCGTGCCAAATCAAATTGGGCCTCAAATCGCAAAGCTTTAGCTGATTGTGCAATTGGATTTGGTAAAAGTGCAATTGGAGGCAAGTATGGTGCAATATATGTAGTCATAGATTCCTCTGATAACCCTGCAAACCCAAAACCAGGAACACTTCGTTATGGTGCAATCCAAACACAGCCTCTCTGGATCATTTTTGCCAGAGACATGGTTATCACACTTGGGAATGAGCTTATCATGAACAGTTACAAGACAATTGATGGTAGAGGAGCTAAAGTGGTGATTGGAAATGGGCCTTGTATTACAATTCAAGGTGTTAGCCATGTTATTGTGCATGGCATTAGCATCCATGATTGTAAACCAGGAAAAAGTGGCCTTGTGAGGAGTAGTGTTGATCATGTTGGTCATAGACGAGGCTCTGATGGAGATGGCATTAGCATATTTGCTTCCTCAAATGTTTGGATCGATCATTGCTTTTTGGCTCGTTGCACTGATGGACTAATTGATATCGTTCATGCCTCAACAGCCATTACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTTATGTTGCTAGGACACAATGACAAATACACAGCTGATAAAATCATGAGAGTAACAATTGCCTTCAACCGGTTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGAGGAGTGGAAAATGTATGCTATAGGCGGCAGTGCCAACCCTACCATTTTAAGTGAAGGGAACTATTTTATAGCACCAAATAACCCAAATGCAAAACAGGTTACCAAGAGGGAGTTGAATGAAAACGGGAAGAACTGGAAATGGAGGTCTTCTAAGGATGTGTTTGTAAATGGTGCTTACTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATACACCTGCTCAGTCTTTTGCTGTTGCTCCAGCGTCCACTGTGCCTGCAATAACACTCAATGCAGGTCCCACAACTTGTGTTGTTGGGAAAGCATGTTAA 1179 0.4131 MATSTTLLLLSFFVLHLALLVNAYEYSTEKYYYNNPEPVSKKPFLNVIDSCWRAKSNWASNRKALADCAIGFGKSAIGGKYGAIYVVIDSSDNPANPKPGTLRYGAIQTQPLWIIFARDMVITLGNELIMNSYKTIDGRGAKVVIGNGPCITIQGVSHVIVHGISIHDCKPGKSGLVRSSVDHVGHRRGSDGDGISIFASSNVWIDHCFLARCTDGLIDIVHASTAITISNNYFTQHDKVMLLGHNDKYTADKIMRVTIAFNRFASGLIERMPRVRFGYAHVVNNKYEEWKMYAIGGSANPTILSEGNYFIAPNNPNAKQVTKRELNENGKNWKWRSSKDVFVNGAYFVPSGYGSCAPNYTPAQSFAVAPASTVPAITLNAGPTTCVVGKAC* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 91 116 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Lja4g4279 392 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Lja4g4279 392 SMART amb_all 119 316 IPR002022 -
Lja4g4279 392 Pfam Pectate lyase 130 310 IPR002022 -
Lja4g4279 392 PANTHER PECTATE LYASE 18-RELATED 1 391 IPR045032 GO:0030570
Lja4g4279 392 Gene3D - 45 385 IPR012334 -
Lja4g4279 392 PANTHER PECTATE LYASE 1 391 - -
Lja4g4279 392 SUPERFAMILY Pectin lyase-like 46 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4279 Lja-Chr4 76432857 76435076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4279 9 392 Polysaccharide Lyase AT1G11920 67.792 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4279 K01728 - gmx:100807483 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4279 4 76432857 76435076 Lja4g4279 4 76432857 76435076 ECH
Lja4g4279 4 76432857 76435076 Lja6g2441 6 53215864 53217353 PCT