Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4250 ATGGGTTGTCATAGTAGCAAGGAGAAAAAACCAGCTAAAATCCATGGTGGATCAGGGACTAGTGGTGCTGCTGTGAATTACCACTCAGTTCCACCACCTACCTCACAGGTTCAGACTTCATCAGCACCACCCAAACCACACTCACAATCACAATCACAGGTTCCAATAGTCACCCCACCACAGAACCCAAAACCTAGTACACCCCAAAACGCTGTCAGAACGGTGCAGAAGACAGAACCTACCATTTTGGGAAAACCCTTTGAAGATATCAAGAACCACTACACTTTGGGCAAAGAATTGGGAAGAGGGCAATTCGGGGTTACCTACTTGTGCACTGAGAATTCCACTGGCAATTTCTACGCCTGCAAATCGATTCTCAAGAGGAAGCTCGTTTCCAAAGCTGACAAAGAAGACATGAAGAGGGAGATTCATATCATGCAGCATTTGTCTGGCCAATCCAACATTGTGGAATTCAAGGGTGCTTATGAGGATCGGTACTCGGTGCACCTTGTCATGGAGCTATGTGCTGGTGGGGAGCTCTTTGATCGAATCATTGCCCAGGGTCATTATTCTGAGAGAGCTGCTGCGTCGATTTGCAGAGCCATTGTCAATGTTGTGCACATTTGCCATTTCATGGGGGTCTTGCATCGCGATCTTAAGCCGGAGAATTTCTTGCTTTCTAGCAAGGATGATGGAGCAGCGCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGTAAGGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTGCCCCTGAGGTACTTCGTCGCAGTTATGGAAAGGAAATAGATATCTGGAGTGCAGGCATCATATTGTATATTCTCTTGAGTGGTGTGCCACCATTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAACTTGACTTTGAAAGTGAACCATGGCCGTCAATATCAGACAGTGCTAAAGATTTAGTCAGGAAGATGCTGACACAGGATCCTAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGCGGAGAGGCATCTGATAAACCAATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGCAACTTGCGTTGAAGGTCATTGCTGAAAATCTATCAACAGAGGAGATCAAAGGTCTCAAAGCAATGTTCGCCAATATGGATACTGACAATAGTGGCACCATCACCTATGAAGAACTGAAGTCAGGCTTGGCTCGAATTGGATCACGACTGTCTGAGACTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATCTCAGCGACCATGCATAGGCATAGACTTGAACGGGATGAACATCTTTACAAAGCATTCCAATATTTTGATAAGGACAACAGTGGGCATATTACTATAGATGAACTGGAGACTGCCATGACACAGCATGGAATGGGTGATGAAGCATCGATAAAGGAAATAATTTCTGAGGTGGATACAGACAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGCCACAGCATGGAAAATCTACTCAGTGA 1632 0.443 MGCHSSKEKKPAKIHGGSGTSGAAVNYHSVPPPTSQVQTSSAPPKPHSQSQSQVPIVTPPQNPKPSTPQNAVRTVQKTEPTILGKPFEDIKNHYTLGKELGRGQFGVTYLCTENSTGNFYACKSILKRKLVSKADKEDMKREIHIMQHLSGQSNIVEFKGAYEDRYSVHLVMELCAGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVLHRDLKPENFLLSSKDDGAALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFESEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKQLALKVIAENLSTEEIKGLKAMFANMDTDNSGTITYEELKSGLARIGSRLSETEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITIDELETAMTQHGMGDEASIKEIISEVDTDNDGRINYEEFCAMMRSGMPQHGKSTQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4250 543 Gene3D Phosphorylase Kinase; domain 1 96 179 - -
Lja4g4250 543 CDD EFh 474 532 IPR002048 GO:0005509
Lja4g4250 543 Gene3D Transferase(Phosphotransferase) domain 1 180 370 - -
Lja4g4250 543 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Lja4g4250 543 Gene3D - 371 461 - -
Lja4g4250 543 Pfam EF-hand domain pair 400 460 IPR002048 GO:0005509
Lja4g4250 543 Pfam EF-hand domain pair 470 532 IPR002048 GO:0005509
Lja4g4250 543 ProSitePatterns Protein kinases ATP-binding region signature. 100 127 IPR017441 GO:0005524
Lja4g4250 543 Gene3D - 378 531 - -
Lja4g4250 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Lja4g4250 543 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Lja4g4250 543 ProSitePatterns EF-hand calcium-binding domain. 515 527 IPR018247 -
Lja4g4250 543 Pfam Protein kinase domain 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4250 543 MobiDBLite consensus disorder prediction 22 57 - -
Lja4g4250 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 537 - -
Lja4g4250 543 CDD STKc_CAMK 93 351 - -
Lja4g4250 543 ProSiteProfiles Protein kinase domain profile. 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4250 543 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Lja4g4250 543 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Lja4g4250 543 ProSiteProfiles EF-hand calcium-binding domain profile. 503 537 IPR002048 GO:0005509
Lja4g4250 543 MobiDBLite consensus disorder prediction 1 86 - -
Lja4g4250 543 SMART efh_1 471 499 IPR002048 GO:0005509
Lja4g4250 543 SMART efh_1 435 463 IPR002048 GO:0005509
Lja4g4250 543 SMART efh_1 399 427 IPR002048 GO:0005509
Lja4g4250 543 SMART efh_1 506 534 IPR002048 GO:0005509
Lja4g4250 543 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Lja4g4250 543 SUPERFAMILY EF-hand 391 531 IPR011992 -
Lja4g4250 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 39 537 - -
Lja4g4250 543 SMART serkin_6 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4250 543 SUPERFAMILY Protein kinase-like (PK-like) 91 360 IPR011009 -
Lja4g4250 543 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4250 Lja-Chr4 76033541 76038202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4250 1 537 EF-hand Containing Proteins AT4G04720 76.208 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g4250 Pkinase 5.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4250 K13412 - gmx:100816859 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4250 4 76033541 76038202 Lja4g4250 4 76033541 76038202 ECH