Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4243 ATGATGCAGCCTGGAGGACCTGGCATGGCTCCACCCCAACAACCCAACCAGCAATACCAGCAACAGCAACAACCCTACATGATGATGCCGCCGCAGCAGCAGCACCAACCTCAGCCTCCGACCATGTGGGCCCCATCCGCCGCCCAGCCTCCGCAACAACAACACGCTCCTCCGCAGCAGCACCAACATGCTCAGCCTTCCACTCCCGACGAGGTCCGCACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATCTCTACCAATGTTTCGCTCACACCGGCGAGTTGGCCACTGTTAAAGTAATCCGGAACAAGAACACGAATCAATCAGAAGGTTATGGATTTCTTGAATTTACTAGCCGTGCCGGTGCGGAGAGAATACTTCAAACATACAATGGCACCATCATGCCGAATGGCGGGCAGAATTTCAGATTGAATTGGGCGACTTTCAGCGCGGGTGGTGAGAGGCGTCATGATGATTCTCCTGATTACACCATATTTGTTGGAGACTTGGCTGCTGATGTGACGGACTATCACCTGACAGAAGTATTTAGAACACGGTATAACTCGGTTAAGGGGGCTAAAGTTGTGATTGATAGGCTCACTAGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAACAGGTTAGAGCCATGACTGAAATGCAAGGGGTTGTTTGTTCAACAAGACCCATGCGTATTGGACCAGCTGCTAACAAAAACCTTGGTACTGGCACTGGCACTCAGCCAAAAGCGTCATATCAGAATTCTCAAGGGCCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATGACCATTTGAGACAAGTTTTTGGGCTGTATGGAGATTTAGTTCATGTGAAGATTCCACAAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGCGCAGAGGAGGCACTTCGGGTTTTGAATGGTACACTTTTAGGCGGACAAAATGTTCGGCTTTCGTGGGGCCGAAGTCCTTCAAACAAACAGACTCAGTCAGATCCAAGCCAGTGGAATAATAGTGCTGGCGGTGCTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGACCCCAACATGTATGCCGGTTATCCAGGATATGCAAATTACCAACCAGCTCAGCAACAGCAGCAGCAGCCACAGCAAATGGGATACAGTTGA 1254 0.4904 MMQPGGPGMAPPQQPNQQYQQQQQPYMMMPPQQQHQPQPPTMWAPSAAQPPQQQHAPPQQHQHAQPSTPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNNSAGGAGYYGYAQGYENYGYAPAGQDPNMYAGYPGYANYQPAQQQQQQPQQMGYS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4243 417 SUPERFAMILY RNA-binding domain, RBD 261 372 IPR035979 GO:0003676
Lja4g4243 417 Gene3D - 166 242 IPR012677 -
Lja4g4243 417 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 410 - -
Lja4g4243 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 153 IPR000504 GO:0003723
Lja4g4243 417 SUPERFAMILY RNA-binding domain, RBD 69 248 IPR035979 GO:0003676
Lja4g4243 417 MobiDBLite consensus disorder prediction 400 417 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 32 46 - -
Lja4g4243 417 Gene3D - 252 358 IPR012677 -
Lja4g4243 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Lja4g4243 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 410 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 243 276 - -
Lja4g4243 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 341 IPR000504 GO:0003723
Lja4g4243 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Lja4g4243 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 233 IPR000504 GO:0003723
Lja4g4243 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 348 IPR000504 GO:0003723
Lja4g4243 417 MobiDBLite consensus disorder prediction 248 276 - -
Lja4g4243 417 Coils Coil 416 417 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 344 364 - -
Lja4g4243 417 CDD RRM1_SECp43_like 74 154 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 1 70 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 12 31 - -
Lja4g4243 417 SMART rrm1_1 74 149 IPR000504 GO:0003723
Lja4g4243 417 SMART rrm1_1 168 242 IPR000504 GO:0003723
Lja4g4243 417 SMART rrm1_1 277 344 IPR000504 GO:0003723
Lja4g4243 417 CDD RRM3_NGR1_NAM8_like 275 346 - -
Lja4g4243 417 Gene3D - 72 152 IPR012677 -
Lja4g4243 417 MobiDBLite consensus disorder prediction 394 417 - -
Lja4g4243 417 CDD RRM2_SECp43_like 166 245 - -
Lja4g4243 417 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4243 Lja-Chr4 75965085 75969376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4243 74 355 Eukaryotic Initiation Factors Gene Family AT4G34110 26.481 1.71e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4243 - - gmx:100796848 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4243 4 75965085 75969376 Lja6g2406 6 52922167 52925678 PCT