Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4242 ATGGACAGTGACGAATTCCCTTGTCCCTCACCATATCCCCATTCTTCTTCCCTTCTCAAAGACATCTCCAATTTCAAAACCCCAAAACGCCCCTCTCTCTCCACCTTCACCACCACCAAATCCCCCTCCACCCAATTCTTCACCGCTTCCAAACAAACTCCAACCACCGCCGCACTCCGCCGTAACCGCCCCACCAAATCCACCACCGCCGCCGCCAGGAAACTCAAGGCCTTCCAGCTGGAGCAATCGCAATCCTCCCGAAAGGTCCTACACAAGAAAGAACAGTCTCTCAGATCCCTAGCCAAGTCCCTCTCCGTTTGGCTCAACTTCCTCCTCCAATGCCCTGCCTCATGCGGCTGCCACTCCTCCATCGCCGACGCCACTACTCCGGTTACCAAGGGGAAACGCGACGGCCGATCGGGAGCCTCGGTTGGAGTCGATTCGACTTGGCGAACTCCGAAGCGACAGAGGAAGACGTGGTCCCGTCCTGGTGGGAAGGAAATTGCTGCTGCCGAGGGTTCCGGTTCGTCGTCGTTGAGGGATTCTCTGAAGGATGTGTGCAGTTTCGATGACCTGAAGCAGAGGATGATGGTTTATCTCAGCATTGGAACTTGTGAAGACGTCTTCCAAATGATGACTCAAGTCACCAAGGCAATTGATGAAGGAAGATTGAATTTGAAGGCGCACTGCCCGATAGTTACTGATTTAGGGTTGAAGGATAAGGCCACCAGAATTCTCATGTGTTATAATCCGATCTGGCTGCGAATTGGATTGTATATATTGTTTGGTGGTGACTCTTTGGTGGTGTTGAACGGGGATGTTGACGCGGATCAAGATGCTGTATTTCTGAAAATGGTCATTGGTAAAATGTTTTTTTCGCACGAGGGTTTAGCAAAAGCATATGCATATAACAAGATGGTTGAAGGCCTATTTAGGGCAGGTTACTATGAGAATTTGGGGAATGTGATTTTGAAGAGGATATTGTTGCTTGTGCTTATCCTTGATAAAGCAAAATCTCAAAGTTTCCTCCCGCTTGAGTATGGTATTGATGGACTTGATGGGGGTTCCCCTTTACTATTCAAAGCAGAATCATGGATTAAATCAAGTAGTCAAGTGATCCAGGAATTTCTATCGTATGATGTAATGCGTGGAGAAGGCAATCTTTTAGCACATTTGGTTATTTTAGGCTACAAAGTATCTCACCAACAGGGGCCTCTTGTTGAGTATGATTTCAGTGTCAGAGATTTATTCATAGATCTCCAAGACGGACTAAAACTGTGTAGAGCTGTTCAGCTCTTGCAAGATAATTGTTCTATCCTTATGAAAATTGTAGTTCCTTCAGACACTCGTAAGAAAAATTTGACAAACTGTGCTCTTGCCCTACAATATCTGAGACAAGCTGGTGTGTCGCTACTTGATGAAGATGACATGATGATTGAAACAGATGATATTGTTAATGGAGATAAACAACTTACAATTTCCTTGCTCTGGAATATGTTTGTTCATTTGCAGATACCTCTGTTGGTTGATAAAACGAGTATAGGTGGGGAAATTTCTAAAATTCGAGGACTTGGCATGGATGACATAACCAGTGCAAATTCTAGTTCTCTGGAATTGCTTTTGAATTGGATTCAGGCTGTATGTGATAATTATAACTGTCCAATTGACAATTTTCTTTCCCTTGTTGACGGCAAAGCTATTTGGTGCTTACTTGATTATTACTTCCAGAAGGAACTTCATAATACCTGTTCATTGAAGGAAGTTAATGACAAAAATTTCAAGGCATCAGTTATGCCAGTCAATGAGTATTCAGATGCATTGTACAATTTTATACTATCCCAGAAGTTGACTACACTACTGGGTAATTTTCCGGAGGTACTTCAAATAAGTGAGCTACTTCAATATAATGGAGCTTGCAGTGATCGAAGTGTGGTGATATTGTTAGTTTTCCTAGCAAGCCAATTATTTGTCAAGAAAAGGGTGGATCACCTAAATTTTCATAAGCTCTTGGGCTTTCGCAGCCTAAATACGAATACTAATTGTAGACATTTGAGAACGATGCAGTGCCTTTCAAGTTCTGAATCAGTTCAAAATACTGATGCTTCAGATGTGCTTGACAATGAAGATGCTGCAAGAAAGTTTAAGGCCATCCACGCTTGGTGGCAAGATATGGCTGAACGAAACCATGTCATGAAACCAGTTGTCACTAACTTGGAGAGTTCTAGGACAACTGAATGCAGCACTAGCATTAAAAGAGAAATTGCTTCAAGAACAATACAGTCACACGTCAGAGGATTGGTTGCACGGCGCAAGTTTGTTAAGATGTTAAATGCTGTTACCCTTTTGCAAACTGTTTTCAGGGCTTGGCTGAAAGTGAGGCAGGAGTCAGTCTGCCTGATATCCAATGCCGTTCAAGTCAATGATTTTTCATGTGATATGTCGAAGCAATCAGAAACATATGAGAGATACACTAAGCTTTTCGTTCATAGGCAGTCTTTTTTGAAATTGAAGAGGTCAGCACAGCTTATCCAGCAAGCAGTGAGGAATTGGCTCCATTGGAGACACCAACAAGAATGTAGCATAAGTCCTGATCATATGATGTTGGACATGGTGACTGCTGCCACTACTGTTCAGAAATTTGTTCGTGGTTGGATCGCACGATCTAGATATATTCATCAGGTAGATCAGAATGAGAAAGCTATGAATATAGCCCAACAGAAACTCATATTTGATCTTCAAACAAGTGCTGCCGTTAGCATTCAGCTTGCTTGGAAAAACTTCTTATGCTGCAAGTGTACTAAGCAACAGCAATTTTGTGCAACAAAAATTCAATGTAATTTCCGGAGGTGGTTCTTGAGAAAAAGGTTTTTGAATCAGATTCAAGCTGTTATTAAAATCCAATCATATTTTCGAAGGTGGAGGTGTTTAAATGATTTTCAGCACATCAAAAGAGTGTCTAAGGCAGCCATTGTCATTCAATCTTATTTACGTGGATGGATTGTGCGGAAGGATTCTTGTGCACGTAGGAATCACATTGTTGAAATTCAAAGGCATTGCCGTGGTTGGCTTGTGAAACGCGACTTCTTGATCCAAAGAGATGCTGTGGTGAAGATCCAGTGTGTAATTCGAAGCCTGAAATGTCAGAAGACTCTCAAAGGTCAGAAAGATGCAGCTTTGGAGATCCAGCGCTTTATTAGGGGACAATTAACCCGTAACTGGCTATTAGGTGGTGCTTCTAAGCTACGCGCAGTTGTTCATGCTGGGTGCATTGCCAGACCATTTGGCTGTTGTAGTTTTCAACTGGATCTATTCTTGTTTTCAGTTGTGAGATTGCAACGATGGTGGAAGGGTCTCTTATTACGTAAATTGATGACAAAATCTGCCATCATTATTCAGTCTCATACTCGTGGGTGGATAGCCAGACGAAAAGCCATTGTTCATAGGCATCGTATCATTATTATACAATCCCACTGGAAAGGTTACCTTCAACGTAAAGCATCAACGGAGAAGTTAATGGATTTGCGCTCAAGAGTGCAAGTGTCTGCTAGAAATGTGGATGACAGTAAGCGCCTCATAAACAGACTATTGGCCGCACTTTCTGAGCTACTGAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAACATTGGATATGGCTACAGGACATTCTCAGAGATGCTGTGAAGAACTAGTAGCTGCTGGGGCTATTGATACCTTGCTGCGGCTTATTCGATCAGTCAGCCGGAGCATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCTACTCTCAGAAACCTTGCCCGCTATCCTCATCTACTAGAAGTGATGATCCAAACCCACAATTCTGTACAAACAATCGTGTTGGAGTTACTTAGGAATAAGCAGGAAGGCTACTTCATTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGCAAAGGCGTTGAGGCCATACTCAGATCCCCTGCCCTACTGAAACGATTGCATGGTCTTGCTGAGGAGCTTACTAGAAAGTCCAATTACGAGAAAAGAAATGCTAAGGGTCCTAGTCCAGTTGTTAGAGAAAACATAGAAAGAAGATTGAGAGAAGCTGCTGAGATTATGAAGCTGATAACACGCTCTTGA 4131 0.4268 MDSDEFPCPSPYPHSSSLLKDISNFKTPKRPSLSTFTTTKSPSTQFFTASKQTPTTAALRRNRPTKSTTAAARKLKAFQLEQSQSSRKVLHKKEQSLRSLAKSLSVWLNFLLQCPASCGCHSSIADATTPVTKGKRDGRSGASVGVDSTWRTPKRQRKTWSRPGGKEIAAAEGSGSSSLRDSLKDVCSFDDLKQRMMVYLSIGTCEDVFQMMTQVTKAIDEGRLNLKAHCPIVTDLGLKDKATRILMCYNPIWLRIGLYILFGGDSLVVLNGDVDADQDAVFLKMVIGKMFFSHEGLAKAYAYNKMVEGLFRAGYYENLGNVILKRILLLVLILDKAKSQSFLPLEYGIDGLDGGSPLLFKAESWIKSSSQVIQEFLSYDVMRGEGNLLAHLVILGYKVSHQQGPLVEYDFSVRDLFIDLQDGLKLCRAVQLLQDNCSILMKIVVPSDTRKKNLTNCALALQYLRQAGVSLLDEDDMMIETDDIVNGDKQLTISLLWNMFVHLQIPLLVDKTSIGGEISKIRGLGMDDITSANSSSLELLLNWIQAVCDNYNCPIDNFLSLVDGKAIWCLLDYYFQKELHNTCSLKEVNDKNFKASVMPVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACSDRSVVILLVFLASQLFVKKRVDHLNFHKLLGFRSLNTNTNCRHLRTMQCLSSSESVQNTDASDVLDNEDAARKFKAIHAWWQDMAERNHVMKPVVTNLESSRTTECSTSIKREIASRTIQSHVRGLVARRKFVKMLNAVTLLQTVFRAWLKVRQESVCLISNAVQVNDFSCDMSKQSETYERYTKLFVHRQSFLKLKRSAQLIQQAVRNWLHWRHQQECSISPDHMMLDMVTAATTVQKFVRGWIARSRYIHQVDQNEKAMNIAQQKLIFDLQTSAAVSIQLAWKNFLCCKCTKQQQFCATKIQCNFRRWFLRKRFLNQIQAVIKIQSYFRRWRCLNDFQHIKRVSKAAIVIQSYLRGWIVRKDSCARRNHIVEIQRHCRGWLVKRDFLIQRDAVVKIQCVIRSLKCQKTLKGQKDAALEIQRFIRGQLTRNWLLGGASKLRAVVHAGCIARPFGCCSFQLDLFLFSVVRLQRWWKGLLLRKLMTKSAIIIQSHTRGWIARRKAIVHRHRIIIIQSHWKGYLQRKASTEKLMDLRSRVQVSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATGHSQRCCEELVAAGAIDTLLRLIRSVSRSIPDQEVLKHALSTLRNLARYPHLLEVMIQTHNSVQTIVLELLRNKQEGYFIASELLKKICSTRKGVEAILRSPALLKRLHGLAEELTRKSNYEKRNAKGPSPVVRENIERRLREAAEIMKLITRS* 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4242 1376 Gene3D - 399 505 IPR036872 -
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 1054 1083 IPR000048 GO:0005515
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 1008 1037 IPR000048 GO:0005515
Lja4g4242 1376 Gene3D - 1178 1351 IPR011989 -
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 752 780 IPR000048 GO:0005515
Lja4g4242 1376 MobiDBLite consensus disorder prediction 130 180 - -
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 986 1014 IPR000048 GO:0005515
Lja4g4242 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1106 1166 IPR027417 -
Lja4g4242 1376 Gene3D - 985 1031 - -
Lja4g4242 1376 Gene3D - 1032 1084 - -
Lja4g4242 1376 Gene3D - 751 799 - -
Lja4g4242 1376 Gene3D - 938 984 - -
Lja4g4242 1376 Gene3D - 870 937 - -
Lja4g4242 1376 Gene3D - 1123 1173 - -
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 1124 1151 IPR000048 GO:0005515
Lja4g4242 1376 Pfam Armadillo/beta-catenin-like repeat 1226 1270 IPR000225 GO:0005515
Lja4g4242 1376 ProSiteProfiles Calponin homology (CH) domain profile. 382 504 IPR001715 GO:0005515
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 959 988 IPR000048 GO:0005515
Lja4g4242 1376 MobiDBLite consensus disorder prediction 1 66 - -
Lja4g4242 1376 Gene3D - 531 656 IPR036872 -
Lja4g4242 1376 SMART arm_5 1225 1270 IPR000225 GO:0005515
Lja4g4242 1376 Pfam Calponin homology (CH) domain 412 504 IPR001715 GO:0005515
Lja4g4242 1376 PANTHER UNCHARACTERIZED 8 1374 - -
Lja4g4242 1376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1236 1269 IPR000225 GO:0005515
Lja4g4242 1376 SUPERFAMILY ARM repeat 1193 1335 IPR016024 -
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 873 890 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 1149 1166 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 1012 1028 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 961 975 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 758 772 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 1056 1073 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 1125 1143 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 939 956 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 1107 1122 IPR000048 GO:0005515
Lja4g4242 1376 Pfam IQ calmodulin-binding motif 987 1003 IPR000048 GO:0005515
Lja4g4242 1376 ProSiteProfiles IQ motif profile. 1147 1176 IPR000048 GO:0005515
Lja4g4242 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1004 IPR027417 -
Lja4g4242 1376 SUPERFAMILY Calponin-homology domain, CH-domain 329 577 IPR036872 -
Lja4g4242 1376 SMART iq_5 1053 1075 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 984 1006 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 751 773 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 935 957 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 1123 1145 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 958 980 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 1146 1168 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 1007 1029 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 869 891 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 774 797 IPR000048 GO:0005515
Lja4g4242 1376 SMART iq_5 1030 1052 IPR000048 GO:0005515
Lja4g4242 1376 MobiDBLite consensus disorder prediction 16 66 - -
Lja4g4242 1376 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 8 1374 - -
Lja4g4242 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1062 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4242 912 1060 Myosins gene family AT1G04160 30.065 4.68e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4242 K16743 - gmx:100788871 1558.89