Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4233 ATGACATCAGCTGCTCCAAGTTCTCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGAGGGATGGTTGCATCTCAGCCTCTTAAAGCTGGCCAAATTGTCCTCAGAGACTCTCCGATTCTGCTGTATTCTACGTTGCCCTTTTCCACACAGTCTTCATCATCGTCCTCCTCTGCATCAGCTGCATGCTTCTGTGGTCGCTGCTTCAGAACCTTGCCACCATCTATACTGCTAGATTCTTCATCACCTGCAGTTTTATGCCCTTCTTGTCGCCACCATCGCTTTTGCAGCTCAAGTTGTCTCTCAAAGGCACTGAACTCTTCCCATTGTTCTTGGGTATGTCAAGCATTATCCCGTCTCCAAGCCAATTCTCTACTGCTTGAACAGCCCGTCGAGCTCCAAGTCCAAGCTCGTTTTCTCATTGCTGCCTACAACCTTGCCAATGTCTCCCCGTCAAACTTTCAAATCTTGCTATCTCTCCAGGGTTCTCCTGATGACACCACCATTGCTGCAGCTCAGCTCCTACACCCCCTTATTTCATCGCTATGTTCACTTGCTGCCATTAGCCCCCAGAATGGGTTTTCTTTGGAACTCACTTCTGCGCTTCTGGCCAAGGACAAGCTCAATGCCTTTGGCTTAATGCAGCCCTTCTCCATCGATGATGATCAGCGTTCTGTCAGAGCTTACGGCATTTACCCCTACGCCTCCTTTTTCAACCATGATTGCCTTCCCAATGCCTGCAGATTCGATTATGTCGACACTAATCCACCTGATGGCGGCCATAATACTGACTTTATTATTAGGATGATACATGATGTTCCTCAAGGTAGGGAGATCTGTTTGAGCTATTTCCCTGTGAATGAGAAATTTTCTAGTAGGCAGAAGAGATTGACGGAAGACTATGGCTTCACTTGTAATTGTGATCGATGTAATGTTGAATCAAATTGGTCAGATAATGAGAGTGTTGAAGGTAATGCAGAGGATGAAGAAGAGGTTATGGATGACGACGAAGATGAAGGTATGGCAGCATCAGACACTGAAGATAATCTCCAAGGAGATAACAGCGATTTCCCACATGCTTATTTCTTTCTGAAATACATGTGTGATAGAACAAATTGCGGGGGAACTTTAGCTCCTCTACCGCCACAGGGTGATACTCCATCTAATATCATGGAATGTAATGTTTGTGGTAAATTGAAGAGTGGCGATGACTTTGATATTGATAATGAGCAAGATGAAGTTCCAATGGAGGACTGA 1257 0.4535 MTSAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSTLPFSTQSSSSSSSASAACFCGRCFRTLPPSILLDSSSPAVLCPSCRHHRFCSSSCLSKALNSSHCSWVCQALSRLQANSLLLEQPVELQVQARFLIAAYNLANVSPSNFQILLSLQGSPDDTTIAAAQLLHPLISSLCSLAAISPQNGFSLELTSALLAKDKLNAFGLMQPFSIDDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNPPDGGHNTDFIIRMIHDVPQGREICLSYFPVNEKFSSRQKRLTEDYGFTCNCDRCNVESNWSDNESVEGNAEDEEEVMDDDEDEGMAASDTEDNLQGDNSDFPHAYFFLKYMCDRTNCGGTLAPLPPQGDTPSNIMECNVCGKLKSGDDFDIDNEQDEVPMED* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4233 418 SMART set_7 8 290 IPR001214 GO:0005515
Lja4g4233 418 Gene3D SET domain 21 310 IPR046341 -
Lja4g4233 418 Gene3D - 128 210 - -
Lja4g4233 418 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Lja4g4233 418 Coils Coil 319 339 - -
Lja4g4233 418 CDD SET_SMYD 217 310 - -
Lja4g4233 418 Gene3D - 64 123 - -
Lja4g4233 418 Pfam SET domain 19 283 IPR001214 GO:0005515
Lja4g4233 418 MobiDBLite consensus disorder prediction 322 344 - -
Lja4g4233 418 SUPERFAMILY SET domain 7 306 IPR046341 -
Lja4g4233 418 MobiDBLite consensus disorder prediction 316 353 - -
Lja4g4233 418 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 413 IPR044238 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja4g4233 SET 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4233 - - gmx:100783406 667.922