Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4228 ATGGTTTTTCCAAAACCTTCTTCTGAATCTGATCTCTTTCTTCATTCTAACTTTGCTTCTCGTTATGCCAGAGACTCTCTTCCTAGGTTCAGCATGCCAGAAAACTCTATGCCAAAGGAATCAGCATACCAGAACATACACGATGAGCTGCAGCTTGATGCTAATCCAAAGCTGAACCTGGCTTCCTTTGTAACCACATCCATGGAGGAAGAGTGCAACAAGCTCATAATGGAATCCATCAACAAGAACTATGTTGATATGGATGAGTACCCTATTACCACTGATCTCCATAATCGATGTGTGAACATGATTGCGCGTTTGTTCCATGCTGAAATTGGAGAAAATGAGAGCGCAATCGGAGCAGGAACCGTTGGATCATCCGAGGCCATAATGCTGGCAGGGCTTGCCTTCAAGAAGAGGTGGCAGAACAAGCGCAAAGCTGAGGGAAAGCCCTGTGATAAGCCAAACTTGGTCACTGGTGCCAATGTTCAGGTTTGTTGGGAGAAGTTTGCAAGGTATTTTGAGGTGGAGTTGAGGGAAGTGAAGGTGAGAGAAGGGTACTACGTGATGGACCCTGCCAAGGCCGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATCTTAGGTTCAACTTACAATGGAGAATTTGAAGATGTCAAGCTCTTGAATGACCTGTTGCTAGAAAAGAACAAGCAAACTGGATGGGATACACCTATTCATGTTGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTATCCAGAGCTGGAATGGGATTTCAGACTGCCATTGGTGAAGAGCATCAATGTTAGTGGCCACAAGTATGGACTTGTTTATGCTGGAATTGGATGGGTTTTATGGAGAAGCAAAGAAGACTTGCCAGAAGACCTTGTTTTCCACATCAATTACCTTGGAGCAGACCAACCTACATTCACCCTGAATTTTTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGGCATGAGGGGTATAAGAGCATAATGGAGAACTGCAGAGAAAATGCTATGGTGCTGAAGGAACGTTTGGAGGAGACAGGATGCTTTAACATCCTCTCAAAGGACAATGGTGTTCCTGTGGTGGCATTTTCTCTGAAGGACAGAAGCCACTATGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGGTAGTGCCCGCGTATCCAATGCCACCGGGCGCACAGCACATCAATGTGCTCCGTGTGGTGGTCAGGGCCGAGTTTTCACGCACACTTGGTGAACGCCTTGTGCTTGACATTAAAAATGTGATGCATGAGCTTCAGAAACCTCACTACCCTGCCAAAATGACCAACATTAGGGAAGAAAATGCATTGGTTGACAATGTGATTGGTGTGAAGAAGAGTGCATTAATGGATGCACAGAGGGAAATCATTGCTCAAGAATCCAACAAGCGCCAGAAAATCATGGCTGCCTAG 1488 0.4536 MVFPKPSSESDLFLHSNFASRYARDSLPRFSMPENSMPKESAYQNIHDELQLDANPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHAEIGENESAIGAGTVGSSEAIMLAGLAFKKRWQNKRKAEGKPCDKPNLVTGANVQVCWEKFARYFEVELREVKVREGYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVLWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEGYKSIMENCRENAMVLKERLEETGCFNILSKDNGVPVVAFSLKDRSHYDEFKISEMLRRHGWVVPAYPMPPGAQHINVLRVVVRAEFSRTLGERLVLDIKNVMHELQKPHYPAKMTNIREENALVDNVIGVKKSALMDAQREIIAQESNKRQKIMAA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4228 495 PANTHER GLUTAMATE DECARBOXYLASE 1 494 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lja4g4228 495 Gene3D - 1 65 - -
Lja4g4228 495 SUPERFAMILY PLP-dependent transferases 16 445 IPR015424 -
Lja4g4228 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja4g4228 495 PANTHER GLUTAMATE DECARBOXYLASE 1 494 - -
Lja4g4228 495 Gene3D - 361 447 - -
Lja4g4228 495 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lja4g4228 495 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4228 Lja-Chr4 75733416 75736208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4228 1 483 Calmodulin-binding Proteins AT5G17330 75.926 0.0 776