Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4225 ATGGTTGCCCAACAGCCGCAACTTCAGATTCAGCCACCGCAGCCTGCACCACCATCTGCCCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTTCTTGCATCTCCCTTGACATGCAAAAAGGGCAATGAATGCGAGTACCGCCATAGTGAGTACGCCCGGGTCAATCCTAGGGATTGCTATTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCATTTCGCCATCCGCCCCTTGATGGATTGATAGGAACCCCAACTGCAGCTGCCGCTGCTGGCGGACCATCTGTACCCCCTCCACAAATTGCGACAGCAGCTGCAACACACGCTCCTTATAATTCTGCCAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCAAATCCTACCACTAGCAGTAAAGTAGCTACTCAGGGCCCGATGGCTAGCCAAGGATTTGAGAATCCAAGTCTTAAGAAGCCTTTTGGTGGCATTGAAAAATATACACAGGAAAGGAAAAGTTCCCAAGGAAATTTTTCAAGCTCTGTTGGAGGTTTTGAGGCTAAGCCTGCCCAAAAAGCTGAAACAGCTAGGTTTCATTTGGAGAAGCATGTGCCGCCACCACCTGCAGGATTTGATAACGAGGCTTCAAGATTTAAGATAACAAGTTCTCCACCACCAATGACCAATGGGCCCACTGTAGCCCGGTCCAATCGTGTGCATCAAGCTCGTTTGCCAGATGATCACAGTTTCCATAGTGGTAAGGACAGTGATGAGTTTCTCAGAGAGTCCTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGGGAGAGGTCAGGATGACAGGAACTTAGACTCTTTGAATGAATATGATATAGGACATTCTGCTGATTATAGTTTGGCAGCTGATGTTGATCGAGAAAGATATCGTGTGCCCCATGCTTATGACTCATACGATCACACGCAAGAGCCATATGCTTGGGAGCAGCGTAGAAAAGCACCAGCCCACGTTGAAAGAAGGACTCAACGCAGATCTGGAAGTCCTGAGAATGTTGAGGTTTCAGATCTCCGGCACCGTTTATCCAAGCGCAGGAAGGTCAATGGCTTAAAATCTGTTGTCACTAATGATTATGCCCCTGGGAGCCATGGTGAGGAACAAAGTCACCGGTTCTTCTCTCAGAAGGATTCACAGAGCTCCATCAGTAGTCGTTTCCGGGGAAGAATAAAACTTCCAGCAAATGGTGCTGATAGTCACCTAGAGAGGGACTCAGACAGAGGAATAAATAGGGGCAGATTGTCATCTGGAAGGCTGCATGCCCCTCACCAGGGAAGGATCCAAGATAGAATAAGAGGAAGCTCCCAAGATGATGAGAGGAGAAACTTCAGGGGGAGAGAACTAATGGGGAACAGAAGTGATTTTGCTGCGCCCAAAAGTCTTTCTGAACTTAAAGTTGGCAGAAACACTGAGAGTAAAGAGCAACATTCGTTGGGGAAGAGAAAAAGTTTCATGGATCACCAACAATCTGATGATGATATTCCGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGAGTTGGTGCAACCTCCCACGGTGGCAAATCATCTGATGATAAGAATAGAGAAATTGCCAGTAGCTCAGATCACACATCTGTCGAAAACACTCAAAACGGATCATTGCCCGTCAAGAGCCATTTGTTAGTTAATGAAGAAGACTCCACGACTCAGGTCACTGATGCAATTGGAAGAGACAGTGATAACGTTGATGTTACTCATGGTCAATCACCTGAGGATGGAATGATCTACGATGAAGCTGCAGAGGATCAGGAGTATGAAGGTGATGATGATCAAAGAGAAGGGGACTATGATTATGACCAAGTTGATGAGGAGGGGGAGTACGAGTATGAACAGGTTGATGAGGGTGAGAATCAAGAGCAAGAATACATGGATGATGAAGAAGGAGATGGGGATGGGGATGACTTTGCTAAGAAGATTGGCGTTGTTATTACATAA 2100 0.46 MVAQQPQLQIQPPQPAPPSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLIGTPTAAAAAGGPSVPPPQIATAAATHAPYNSAKQAVPCIFFQKGLCLKGDRCAFLHGPNPTTSSKVATQGPMASQGFENPSLKKPFGGIEKYTQERKSSQGNFSSSVGGFEAKPAQKAETARFHLEKHVPPPPAGFDNEASRFKITSSPPPMTNGPTVARSNRVHQARLPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKGRGQDDRNLDSLNEYDIGHSADYSLAADVDRERYRVPHAYDSYDHTQEPYAWEQRRKAPAHVERRTQRRSGSPENVEVSDLRHRLSKRRKVNGLKSVVTNDYAPGSHGEEQSHRFFSQKDSQSSISSRFRGRIKLPANGADSHLERDSDRGINRGRLSSGRLHAPHQGRIQDRIRGSSQDDERRNFRGRELMGNRSDFAAPKSLSELKVGRNTESKEQHSLGKRKSFMDHQQSDDDIPFEGPKPLSEILKEKRGVGATSHGGKSSDDKNREIASSSDHTSVENTQNGSLPVKSHLLVNEEDSTTQVTDAIGRDSDNVDVTHGQSPEDGMIYDEAAEDQEYEGDDDQREGDYDYDQVDEEGEYEYEQVDEGENQEQEYMDDEEGDGDGDDFAKKIGVVIT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4225 699 SUPERFAMILY CCCH zinc finger 119 143 IPR036855 GO:0046872
Lja4g4225 699 SMART c3hfinal6 58 81 IPR000571 GO:0046872
Lja4g4225 699 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Lja4g4225 699 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Lja4g4225 699 ProSiteProfiles Zinc finger C3H1-type profile. 25 54 IPR000571 GO:0046872
Lja4g4225 699 MobiDBLite consensus disorder prediction 439 456 - -
Lja4g4225 699 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 11 697 - -
Lja4g4225 699 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 11 697 - -
Lja4g4225 699 MobiDBLite consensus disorder prediction 351 699 - -
Lja4g4225 699 MobiDBLite consensus disorder prediction 630 686 - -
Lja4g4225 699 MobiDBLite consensus disorder prediction 351 384 - -
Lja4g4225 699 ProSiteProfiles Zinc finger C3H1-type profile. 56 82 IPR000571 GO:0046872
Lja4g4225 699 MobiDBLite consensus disorder prediction 576 611 - -
Lja4g4225 699 MobiDBLite consensus disorder prediction 509 575 - -
Lja4g4225 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 144 IPR000571 GO:0046872
Lja4g4225 699 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g4225 699 MobiDBLite consensus disorder prediction 466 491 - -
Lja4g4225 699 Pfam Zinc-finger containing family 26 80 IPR041686 -
Lja4g4225 699 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Lja4g4225 699 Gene3D - 109 175 - -
Lja4g4225 699 Gene3D - 18 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4225 Lja-Chr4 75704846 75708458 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g4225 zf-CCCH_3 5.4e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4225 - - gmx:100787836 877.47