Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4214 ATGGAAGCAATGATGAGAATTTCAACACTTGTAGTTATGCTCCTTGTGTGCTTTTCTTCTATACAACTAGTCCTTGGCCATGACCACTTAGACAAAGAAACAACTTTGAAAGTGCTTTTACAAGTGAAGAAGTCCTTTGTGCAAGACCCACAAAATGTTTTGAGTGATTGGTCAGAGGACAACACAAATTACTGTAGCTGGAGAGGAGTGTCATGTGGATTGAACTCAAACACAAACTCAAACTCTTTGGATGGTGACTCGGTTCAAGTGGTGGGACTCAACCTTTCTGACTCGTCACTCACCGGGTCAATATCACCTTCACTCGGTCATTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAACCTCCTTGGTCCCATTCCACCAAACCTCTCCAACCTCACTTCCTTGGAATCACTGCTTCTCTTCTCTAACCAGCTCACCGGTCACATTCCGGCCGAGCTTGGCTCGCTGGCGAGTCTCCGAGTCATGCGACTCGGTGACAACTCGTTAACCGGTATGATTCCCGCGTCCATTGGGCACCTATCTAACCTGGTCAGCCTTGCTTTAGCTTCATGTGGACTCACCGGGTCGATTCCACCTCAACTCGGTCAACTCAGTCTCTTGGAGAATCTGGTTCTGCAGGAAAACGAGCTAACGGGTCCGATTCCAGCCGAGTTGGGAAACTGCTCAAGTCTCACCGTCTTCACCGCTGCCAACAACAAATTCAATGGCTCAGTTCCGAGTGAACTGGGTCAACTCAAGAATCTACAGCTTCTCAACCTTGTCAATAACAGCCTAACAGGGGAGATTCCGAGTCAACTCGGTGACATGACTGAACTCGTTTACCTGAATTTCATGGGTAACCAGCTTGAGGGTGCTATTCCACCGTCACTATCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCCATGAACAAGCTCAGTGAAGAAATTCCAGATGAGTTAGGCAACATGGGTCAGCTAGCTTTCATGGTTCTGTCTGGAAACTACCTCAATGGTACCATACCAAGAACCATATGTTCCAATGCAACAAGCTTGGAACACTTGATGCTATCACAAAATGGACTAAATGGTGAGATTCCAGCTGAGTTGAGTCTATGCCAATCACTGAAGCAACTTGACTTGTCCAACAATTCACTCAATGGGTCCATTCCTCTTGAACTTTATGGGCTACTGGGGTTAACTGATCTCTTGCTCAACAACAACACCTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGCAGCTTGCAGACACTTGCATTGTTTCACAACAATTTGCAGGGTTCTCTGCCCAAAGAGATTGGAATGCTTGACCAGTTGGAACTTTTGTATCTTTATGATAATCAATTATCAGGGGCTATACCTATGGAGATTGGTAATTGCTCAAGCTTGCAAATGATTGATTTTTCTGGAAACAGTTTCAGCGGCGAAATTCCGGTCACTATTGGAAGGCTGAAGGAGTTGAATTTGCTTGACTTTAGGCAGAATGAGCTTGAGGGTGAGATTCCTGCCACTTTGGGTAACTGTTATAATCTTAGCATTCTGGATTTGGCTGACAATCAACTCTCTGGTGCAATTCCTGCAACATTTGGACTTCTCAAGTCATTGCAGCAGCTCATGCTCTACAATAATTCTCTTGAAGGTAACCTTCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTGAATCTTTCAAAGAACAGATTGAATGGCAGTATAGCTGCATTGTGTAGCTCCGGATCGTTTCTTTCTTTTGATGTTACCGACAATGAGTTCGACGGTGAAATTCCGCCTCATCTGGGAAACTCTCCCTCCCTTCAGAGACTAAGATTAGGTAACAACAAGTTTTCTGGTGAAATTCCAAGGACATTGGGGAAAATCCATGACCTGTCACTGTTAGACCTCTCAGGAAACTCACTCACTGGAACAATACCAGCTGAGCTTTCTTTGCGCAATAAACTGGCTTACATTGATCTAAGCAGTAATCTTCTTTTTGGAGGATTACCATCATGGCTTGGAAGTTTGCCAGAGTTGGGAAAGCTCAAGCTCTCTTCCAACAATTTTTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTGCTAGTTCTATCTCTAAATGACAACTCTCTCAATGGAAGTCTCCCATCTGATATTGGCGATCTTGCATCCCTTAATGTCCTCAGACTTGATCATAATAAGTTCTCTGGATCAATCCCTCCAGAGATAGGTAGGTTGAGTACACTTTATGAGCTGCACCTCTCCAGTAATAGCTTTAATGGTGAGATGCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATTATTTTAGACCTCAGTTACAACAATCTCTCTGGTCGAATTCCGCCTTCACTTGGGACTTTGTCAAAGTTAGAAGCACTTGATCTTTCCCACAATCAACTCAATGGAGAAATCCCTCCACAAGTTGGTGAATTGAGCAGCTTGGGGAAGATTGACCTCTCTTACAACAACCTTCAAGGAAAATTGGACAAGAAGTTCTCGCGCTGGCCAGATGAGGCGTTTGAAGGGAACTTACATCTTTGTGGAAGCCCTCTTGACCGCTGCAATGATACTCCCAGCAATGAGAATTCAGGCCTGAGTGAGTCATCAGTAGTGATAATTTCTACTATTTCAACATTAGCTGCAATTGCACTATTGGTACTTTCAGTGAGAATCTTCTGCAGAAACAAGCAAGAATTTTTTAGGAAAAACAGTGAAGTGACTTATGTTTACTCTTCCTCTTCATCACAAGCACAGAGGCGGCCACTTTTCCAACTACAAGCTTCTGGAAAGAGAGATTTCAGGTGGGAAGACATCATGGATGCCACAAACAACCTAAGTGATGACTTCATGATTGGTTCGGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGTTACTGGAGAGACAGTTGCTGTCAAGAAGATTTCATCAAAAGATGATTTTTTGTATGATAAAAGCTTCATGAGAGAAGTTAAGACACTAGGGAGAATCAGGCATAGGCATCTGGTGAAGCTGATAGGATACTGCAGCAGTAAAGGAAAAGGAGCAGGTTGGAATTTGCTGATATATGAGTACATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGTAAACCAGCCAAGGAGAGTAAAGTAAAGAAGAGCCTTGATTGGGAGACAAGGTTGAAAATTGCTGTGGGACTGGCTCAAGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAAACCAGCAATGTATTGCTAGATTCTAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCTCTCATTGAGAATTATGATGACTCCAATACTGAGTCAAATGCTTGGTTTGCTGGGTCTTACGGCTACATGGCTCCAGAGCATGCATTCTCCCTGCAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAGTCGTTCTTATGGAACTTGTTAGCGGTAGAATGCCAACAAGTTTTGGACCAGAGATGGACATGGTGAGATGGGTGGAGATGCATATTAAAGACCAGGAGAAAACATGTCCTGAGGAATTGATAGATTCAGAGCTGAAACCTCTTTTACCTGGAGAAAACCTTGCTGCATTCCAAGTACTTGAGATAGCCCTACAATGCACTAAAATTACACCCCAGGAGAGGCCATCTTCAAGGAAAGTATGTGATCTTCTTCTCCATATATTCAACAACAGAATGGCCAAGTTTGAGAAGAAAAATTTGGATCGTTACAAGTGA 3819 0.4362 MEAMMRISTLVVMLLVCFSSIQLVLGHDHLDKETTLKVLLQVKKSFVQDPQNVLSDWSEDNTNYCSWRGVSCGLNSNTNSNSLDGDSVQVVGLNLSDSSLTGSISPSLGHLQNLLHLDLSSNNLLGPIPPNLSNLTSLESLLLFSNQLTGHIPAELGSLASLRVMRLGDNSLTGMIPASIGHLSNLVSLALASCGLTGSIPPQLGQLSLLENLVLQENELTGPIPAELGNCSSLTVFTAANNKFNGSVPSELGQLKNLQLLNLVNNSLTGEIPSQLGDMTELVYLNFMGNQLEGAIPPSLSQLGNLQNLDLSMNKLSEEIPDELGNMGQLAFMVLSGNYLNGTIPRTICSNATSLEHLMLSQNGLNGEIPAELSLCQSLKQLDLSNNSLNGSIPLELYGLLGLTDLLLNNNTLVGSISPFIGNLSSLQTLALFHNNLQGSLPKEIGMLDQLELLYLYDNQLSGAIPMEIGNCSSLQMIDFSGNSFSGEIPVTIGRLKELNLLDFRQNELEGEIPATLGNCYNLSILDLADNQLSGAIPATFGLLKSLQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSGSFLSFDVTDNEFDGEIPPHLGNSPSLQRLRLGNNKFSGEIPRTLGKIHDLSLLDLSGNSLTGTIPAELSLRNKLAYIDLSSNLLFGGLPSWLGSLPELGKLKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPSDIGDLASLNVLRLDHNKFSGSIPPEIGRLSTLYELHLSSNSFNGEMPAEIGKLQNLQIILDLSYNNLSGRIPPSLGTLSKLEALDLSHNQLNGEIPPQVGELSSLGKIDLSYNNLQGKLDKKFSRWPDEAFEGNLHLCGSPLDRCNDTPSNENSGLSESSVVIISTISTLAAIALLVLSVRIFCRNKQEFFRKNSEVTYVYSSSSSQAQRRPLFQLQASGKRDFRWEDIMDATNNLSDDFMIGSGGSGKIYKAELVTGETVAVKKISSKDDFLYDKSFMREVKTLGRIRHRHLVKLIGYCSSKGKGAGWNLLIYEYMENGSVWDWLHGKPAKESKVKKSLDWETRLKIAVGLAQGVEYLHHDCVPKIIHRDIKTSNVLLDSKMEAHLGDFGLAKALIENYDDSNTESNAWFAGSYGYMAPEHAFSLQATEKSDVYSMGVVLMELVSGRMPTSFGPEMDMVRWVEMHIKDQEKTCPEELIDSELKPLLPGENLAAFQVLEIALQCTKITPQERPSSRKVCDLLLHIFNNRMAKFEKKNLDRYK* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4214 1272 SMART serkin_6 966 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4214 1272 SMART LRR_typ_2 832 863 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 303 327 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 544 568 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 687 711 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 424 447 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 135 159 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 808 830 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 496 520 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 255 279 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 183 207 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 353 376 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 448 472 IPR003591 -
Lja4g4214 1272 SMART LRR_typ_2 735 759 IPR003591 -
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 34 156 IPR032675 -
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 157 237 IPR032675 -
Lja4g4214 1272 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Lja4g4214 1272 Pfam Leucine rich repeat 761 821 IPR001611 GO:0005515
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 238 398 IPR032675 -
Lja4g4214 1272 Gene3D Transferase(Phosphotransferase) domain 1 1047 1271 - -
Lja4g4214 1272 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 1267 - -
Lja4g4214 1272 PRINTS Leucine-rich repeat signature 808 821 - -
Lja4g4214 1272 PRINTS Leucine-rich repeat signature 379 392 - -
Lja4g4214 1272 ProSitePatterns Protein kinases ATP-binding region signature. 972 995 IPR017441 GO:0005524
Lja4g4214 1272 Gene3D Phosphorylase Kinase; domain 1 926 1046 - -
Lja4g4214 1272 Pfam Protein kinase domain 971 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 491 589 IPR032675 -
Lja4g4214 1272 SUPERFAMILY L domain-like 349 701 - -
Lja4g4214 1272 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 1267 - -
Lja4g4214 1272 SUPERFAMILY Protein kinase-like (PK-like) 947 1252 IPR011009 -
Lja4g4214 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1097 1109 IPR008271 GO:0004672|GO:0006468
Lja4g4214 1272 SUPERFAMILY L domain-like 666 854 - -
Lja4g4214 1272 SUPERFAMILY RNI-like 92 414 - -
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 590 884 IPR032675 -
Lja4g4214 1272 SMART LRR_sd22_2 111 137 - -
Lja4g4214 1272 SMART LRR_sd22_2 303 322 - -
Lja4g4214 1272 SMART LRR_sd22_2 448 463 - -
Lja4g4214 1272 SMART LRR_sd22_2 544 570 - -
Lja4g4214 1272 SMART LRR_sd22_2 808 834 - -
Lja4g4214 1272 Gene3D Ribonuclease Inhibitor 399 490 IPR032675 -
Lja4g4214 1272 ProSiteProfiles Protein kinase domain profile. 966 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4214 Lja-Chr4 75564193 75568740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4214 618 855 Receptor kinase-like Gene Family AT1G17750 34.351 3.09e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja4g4214 Pkinase 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4214 - - gmx:100801889 1975.29