Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4208 ATGGAGTACAAGCAAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTAAGCTCTCAAAAAGATAGCTTTCCTCAAACTCTTCTTGACCCACAACCACAATCACTTATGGTTACAGAGAACACCACAAACAGCAACAACATCATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCCCTCTCTATCAGCAATCCACTTGGGACCCTAATGTTCAAGAAGTACAAGATATGAGCTATGCTAACCATCCAGAACAACAATTTCAGCATATTGATGCACAAAACTACTGCCAAAGCTACACTCCTTCCATACTAGACCCTTCTTACCCTTCACCAGATCTCCTAAACTTTCTCCACTTGCCCACATGCTCAGCTTCATCTTTACTCACCAATCCACCCAACATTTGCATCTCAAACCCAACTCAGAGGACACCCAATTTCCAGAACTCAATGACCTTTCTAGGAGACCTTCCAATGGGACCAGACAACACAAGTGCATCCTCAGTTCTGTATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTCCAATCTCTCCCCCGTGGCTACAGGTTGCCAACCAGCTCCAGGGACGATTCGCTTTTCGGTGGAGGGGATGAGATGGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGATTTCAATAGGGACACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGGTGCCAAACCTTTTGCAACTGAGAAAGACAGAAGAGAGCAATTGAATGGAAAATACAAAATCTTGAGGAGTCTTATCCCTAACCCCACCAAGCCTGATAGAGCCTCTGTTGTTGGTGATGCCATTGAGTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAACTATTGGTGGAGAAGAAAAGACATGAGAGGGAGAGGTGCAAGAGGCCAAAAAACGAAGAGGATGCTGAGGAAAGCTGTAACATTAAGCCTTTTGGGGATCCAGATGGATACATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTCTGGATGAACTTCAGTTGGAACTTCACCATCTTGCAGGTGGACATGTTGGTGAATATTGGAGTTTCTTGTTCAATAGCAAGGTAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTTTGGACAGTCAATACGCTGCAGCAGTTCCACAGACAAGTAGCTATTAG 1257 0.4527 MEYKQKMHEQTGCFDPNTMAEGVSSQKDSFPQTLLDPQPQSLMVTENTTNSNNIMDNHLVQEVIDAPLYQQSTWDPNVQEVQDMSYANHPEQQFQHIDAQNYCQSYTPSILDPSYPSPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMTFLGDLPMGPDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYRLPTSSRDDSLFGGGDEMEGDGSQLDMGVLDFNRDTASVGKGREGKGAKPFATEKDRREQLNGKYKILRSLIPNPTKPDRASVVGDAIEYIRELIRTVNELKLLVEKKRHERERCKRPKNEEDAEESCNIKPFGDPDGYIRTSWLQRKSKDSEVLDELQLELHHLAGGHVGEYWSFLFNSKVIEGSSVYASAIANRVIDVLDSQYAAAVPQTSSY* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4208 418 MobiDBLite consensus disorder prediction 1 30 - -
Lja4g4208 418 PANTHER TRANSCRIPTION FACTOR BHLH91 8 357 - -
Lja4g4208 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983
Lja4g4208 418 PANTHER TRANSCRIPTION FACTOR BHLH91 355 415 IPR045895 GO:0006355|GO:0048658
Lja4g4208 418 PANTHER TRANSCRIPTION FACTOR BHLH91 8 357 IPR045895 GO:0006355|GO:0048658
Lja4g4208 418 SMART finulus 254 303 IPR011598 GO:0046983
Lja4g4208 418 CDD bHLH_AtMYC1_like 253 317 IPR045896 -
Lja4g4208 418 Gene3D - 251 322 IPR036638 GO:0046983
Lja4g4208 418 Coils Coil 294 314 - -
Lja4g4208 418 Pfam Helix-loop-helix DNA-binding domain 254 297 IPR011598 GO:0046983
Lja4g4208 418 PANTHER TRANSCRIPTION FACTOR BHLH91 355 415 - -
Lja4g4208 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 316 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4208 Lja-Chr4 75525841 75528362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4208 7 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 32.329 2.26e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g4208 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4208 - - gmx:100782512 591.652