Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4196 ATGGCTGAACCTCACTCCTCTCACTCTCAATCTCCCACACCCACCCTAAGCCCCATCACAATAAGCCCACCACACCCTCCTCATGATCAAGTTGCCGGTTTTGATTGGATGGTTCTTGTAGCAGCAATTCTATGTGCCTTTCTATGTGCTCTTGGCTTAAACACCATGTTGCAATGTGTGTTCCAATGTGCCTCTCGTGTCCTCACTGAGCCTCTGCATTGGATTGCTTCTCGGAGGCTCAATTCTGGGCTTAAGAAGAAAGAAATGGTGGCTCTGCCTACCTCAACTTATAGAAATAATTCTTCAGATTCTCCTAATTCTTCAGGTTCTAGCTGTGTGATTTGCTTAGCTGAATTCTGTGATGGGGAGCAGATAAGGTTCCTCCCAAAGTGTAATCACCATTTCCATGTGGTTTGCATTGACAAGTGGTTGCTCTCTCATTCTTCTTGTCCCACTTGCAGGAATCTTACACAAGTCTAA 480 0.4542 MAEPHSSHSQSPTPTLSPITISPPHPPHDQVAGFDWMVLVAAILCAFLCALGLNTMLQCVFQCASRVLTEPLHWIASRRLNSGLKKKEMVALPTSTYRNNSSDSPNSSGSSCVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRNLTQV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4196 159 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g4196 159 Pfam Ring finger domain 111 154 IPR001841 -
Lja4g4196 159 SUPERFAMILY RING/U-box 111 156 - -
Lja4g4196 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 158 IPR013083 -
Lja4g4196 159 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g4196 159 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 155 - -
Lja4g4196 159 PANTHER OS06G0666500 PROTEIN 8 155 - -
Lja4g4196 159 SMART ring_2 112 153 IPR001841 -
Lja4g4196 159 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4196 Lja-Chr4 75436206 75437191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4196 1 154 C3H Transcription Factor Family AT3G10910 38.272 1.82e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4196 - K19040 cam:101507208 233.417