Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4167 ATGGCCGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTACTATGATTCGAAGTTTGGGAGGAAGAAGGTTGTGCAGAATGGTGAGAATGCTGATAAAGCTGTTGGTAATGGAAGTTCGATGAGCGTAGTATCGAATGGTAATGTGCATTCCAAAAGGTCATCGGATATGGCAATTTACGAGCAGCTTCGGAGCCAGGGGCAGAATGGGATCCACACAAATGATGTTTCACCAAACAATATGGATGAGAGGCCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATAAAGGGGCTGGAGAATGCAAAACGCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGGTTTGTTATCACCATGGAAGGGAATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGAAGCAAGTAGACGATTGAAAACTGAGCTACTCATTCAGATGGACGGCTTAACACGGACAGATGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCTGAACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTTAAGACGTTTGATGTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGAGCTACCAAAAGTTGGGCCAATCAGACCTGAGGATATACAGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA 1215 0.442 MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQNGENADKAVGNGSSMSVVSNGNVHSKRSSDMAIYEQLRSQGQNGIHTNDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4167 404 SMART AAA_5 156 293 IPR003593 -
Lja4g4167 404 CDD AAA 127 291 - -
Lja4g4167 404 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 10 402 - -
Lja4g4167 404 PANTHER AAA DOMAIN-CONTAINING 10 402 - -
Lja4g4167 404 Gene3D - 292 380 - -
Lja4g4167 404 Pfam ATPase family associated with various cellular activities (AAA) 160 290 IPR003959 GO:0005524|GO:0016887
Lja4g4167 404 Gene3D - 119 394 IPR027417 -
Lja4g4167 404 Pfam AAA+ lid domain 317 353 IPR041569 -
Lja4g4167 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4167 Lja-Chr4 75117237 75123996 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4167 154 363 Calmodulin-binding Proteins AT3G56690 37.089 2.33e-32 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4167 4 75117237 75123996 Lja4g4167 4 75117237 75123996 ECH