Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4157 ATGGATCTCAGCGAAGAAGTTAGGGCAGCTCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATGTTGGACAAGGCATTTACATGAAGGAGATGAAATCCCTCATCAACCTCAAGCGTCGCCGCCTCATCGTCGACATCTCCGATCTCCACAACTTCCGCGACTTGGGAAACAGGATTTTGAGGAATCCTAGTGAGTACATGCAATCCTTCTGCGATGCGGTCACGGATGCGGTTCGTGCTATTGATCCCAAGTTTTTGAAGGAAGGGGAACAGGTGCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTCACTCCCCGGGAACTTCTGTCTCAATTCATTGGTTCCATGGTCTGTGTTGAGGGCATTGTCACAAAATGTTCTCTTGTTAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACCACTCGTGATTATCGAGATATTACATCCAATTTGGGCTTGCCAACAGGGTCTGTTTATCCTACAAGGGATGAAAATGGCAACTTACTTGTCACTGAGTTTGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAGCTCCCAAGAACAGTGGATATCATAGTGGAGGATGACCTTGTTGATTCTTGCAAGCCAGGAGATCGTGTGGCAATTGTGGGGATATATAAGGCTCTTCCAGGAAAAAGCCAAGGCAGTGTGAATGGTGTATTTAGGACTGTGCTCATAGCGAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCTCCATTTTTTAGTACTACCGACCTCAGTGACATAAAAAAGTTAGCTAAAAGAAATGATATATTTGACCTGCTTGGTAATTCAATTGCACCTTCTATATACGGACATACTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTCGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTGCGAGCAATTATGAATATTGCTCCCCTGGCCATATCAACAACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCTGATCAAGAAACTGGGGAAAGAAGACTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCAATACACGAAGTTATGGAACAGCAGACTGTGACAATTGCGAAAGCAGGGATCCATGCATCGCTTAATGCTCGATGCAGTGTGGTGGCTGCTGCGAATCCCATATATGGAACTTATGATCGTTCGTTGACCCCAACTAAAAATATTGGACTACCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTGCGTATGCATCGATTTCTTTCGCCCATGGATGGAGGTGGGGCAGCACTAGATGGGAGCTCAGGATATGGAAGACAAGATGAAGCTGATGCAGAATCATCTATCTTTGTCCAATATAACAGAATGTTACATGGGAAGAAAACTGTAAAAGGAAACAAACGTGATACACTCACTATAAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGGTTCAACCTGATTTGACTGATGAGGCATCTGACCAGATAGCCACAGCATATGCTGAGCTCAGAAATTCAAATTCAAATGCTAAGACTGGAGGAACGCTTCCTATAACTGCGAGAACTTTAGAAACCATTATACGTCTCTCAACTGCTCATGCCAAATTGAGGTTGAGCATGCAGGTTACAAAGACTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCGATATATCACAAAGAACTGACAGAAATGGAGGACCGTGAGCAAGAGAGGGAGAGAGAATTGGAGAGGAAGCGTGTTGCTGATGGTGATAATGCTGGTCCTGAGCGTGATCCTAAACGTACACGAGGGTCAACATCAGATGCCATGGAAGTGGACGATGATTCAGCAGCCCCATCTGCTGTCAGTCTCACTCCTGAAAGAATCGAAGCATTTAACTCTCTATTTGGTCAGCATATGCGTGCCAACCGCTTGGACCAAATATCTATTGCAGACATTGAGGATGTTATCAAAGGATCTGATTCCATATACAGCTCAGAGGATATATTAGTCCTATTAGAGAAGTTGCAAGAGGACAATAGAGTGATGATAGTTGCTGGAATGGTGCATATGATATCAGGTTGA 2322 0.4371 MDLSEEVRAAHKREFADFLDQDVGQGIYMKEMKSLINLKRRRLIVDISDLHNFRDLGNRILRNPSEYMQSFCDAVTDAVRAIDPKFLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTTRDYRDITSNLGLPTGSVYPTRDENGNLLVTEFGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGIYKALPGKSQGSVNGVFRTVLIANNVSLLNKEANAPFFSTTDLSDIKKLAKRNDIFDLLGNSIAPSIYGHTWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFLSPMDGGGAALDGSSGYGRQDEADAESSIFVQYNRMLHGKKTVKGNKRDTLTIKFLKKYIHYAKHRVQPDLTDEASDQIATAYAELRNSNSNAKTGGTLPITARTLETIIRLSTAHAKLRLSMQVTKTDVDAALKVLNFAIYHKELTEMEDREQERERELERKRVADGDNAGPERDPKRTRGSTSDAMEVDDDSAAPSAVSLTPERIEAFNSLFGQHMRANRLDQISIADIEDVIKGSDSIYSSEDILVLLEKLQEDNRVMIVAGMVHMISG* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4157 773 Gene3D - 135 189 - -
Lja4g4157 773 Gene3D - 3 99 - -
Lja4g4157 773 PANTHER DNA HELICASE 3 764 - -
Lja4g4157 773 SMART AAA_5 331 484 IPR003593 -
Lja4g4157 773 Pfam MCM OB domain 109 239 IPR033762 -
Lja4g4157 773 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Lja4g4157 773 MobiDBLite consensus disorder prediction 650 700 - -
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4157 773 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 Gene3D - 109 239 IPR012340 -
Lja4g4157 773 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 764 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 MobiDBLite consensus disorder prediction 650 689 - -
Lja4g4157 773 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Lja4g4157 773 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja4g4157 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 656 IPR027417 -
Lja4g4157 773 Coils Coil 644 667 - -
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 Gene3D - 271 664 IPR027417 -
Lja4g4157 773 CDD MCM3 292 641 - -
Lja4g4157 773 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4157 773 Pfam MCM N-terminal domain 12 84 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4157 Lja-Chr4 75012290 75018001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4157 1 575 Core DNA Replication Machinery Family AT5G46280 79.688 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4157 K02541 - gmx:100811545 1284.63