Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4154 ATGGACGTGAGCGACGAAGTTAGGGCAACGCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATGTTGGAGAAGGCACATACATGAAGGAGATCAAATTGCTCATCGAACAAAGGCGCCGCCGCCTTATCGTCGACATCTCCGATCTCCACATCTTCCGTGACTTAGGAAACAGGATTTTGAGGAATCCTGGTGAGTACATGCAATCCTTCTGCGACGCGGTCACGGACGCTGTTCGTGCTATTGATCCCAAGTTTTTGAAGGAAGGGGAGCAAGTGCTTGTAGGATTTGAAGGCCCTTTTGTTTCTCGCCGCGTCACGCCCCGGGAACTTTTATCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACAAAATGTTCTCTTGTTAGGCCAAAGGTTATTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACCACTCGTGAATACCGAGATATTACGTCCAATTTGGGTTTACCAACAGGATCTGTTTATCCTACAAGGGATGAAACTGGCAACTTACTTGTCACTGAGTTTGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGTGGAGGATGACCTTGTTGATTCTTGCAAGCCAGGAGATCGCGTGGCGATTGTGGGGATATATAAGGCTCTTCCAGGGAAAAGCCAAGGCAGTGTGAATGGTGTATTTAGGACTGTGCTCATAGCGAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCTCCAATTTTTAGTCCTGATGACGTCAAGGACATAAAAAAGTTAGCTACAAGAAATGATATATTTGACCTGCTTGGTAATTCAATTGCACCTTCTATATACGGACATACTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGATATTAACATGATGATGGTCGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTGCGAGCAATTATGAATCTTGCTCCCTTGGCCATATCAACAACAGGCCGGGGGTCATCTGGAGTTGGTTTGACAGCAGCAGTTACATCAGATCAAGAAACGGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTCGCAATACATGAAGTTATGGAACAGCAGACTGTGACAATTGCTAAAGCTGGGATCCATGCATCACTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACCCCGACCAAAAATATTGGACTACCAGACTCCTTGCTCTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCTTCAAATATCTGATCATGTTCTGCGTATGCATCAATTTCCTGCTTCCATGGATGGAGGTGGGATTGCACTAGATGGAAGCTCCGGATATGGAAGAGAAGATGAAGCTGATTCAGAATCATCTATCTTTGTCAAATATAACAGAATATTACATGGAAGTGGTCCCAAACGTGATACGCTCACAACAAAGTTTCTCAAAAAGTATATCCGTTATGCTAAGCTTAGGTTTCAACCTGAATTGACTAATGAGGCATCTGACCAGATTGCCACAGCATATGCTGAGCTGAGAAATTCAAGTTCAAATGCAAAGACTGGAGGAACGCTTCCTATTACTGCCAGAACATTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAGGTTGAACATAAAGGTTACAAAGACTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCAATATATCACAAAGAGCTTACAGAAATTGAGGACCGTGAGCAAGAGAGGGAGGGAGAATTGGAGAGGAAGCGTAGGGCTGATGCTGAAAATGATGGTCCTGATCGCGATCCTAAGCGTAAAAGAGGATCAACATCAGATGCCATGGAAATGGATGATACCTCAGCAGCCCCATCTGCTGTCAGTCTTACTCCTGAAAGAATTGAAGCATTTAACTCTCGATTTGGTCAGCATATGCGTGCCAACCGCTTGGACCAAATATCTATTGCAGACATTGAGGATGTTACCAACAAAGGGGCTGATTCCACTTACAGCTCAGCAGATATATTACTCCTGTTAGAGAAGTTGCAGGGTGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAA 2310 0.4364 MDVSDEVRATHKREFADFLDQDVGEGTYMKEIKLLIEQRRRRLIVDISDLHIFRDLGNRILRNPGEYMQSFCDAVTDAVRAIDPKFLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVIKSVHFCPTTGNFTTREYRDITSNLGLPTGSVYPTRDETGNLLVTEFGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKALPGKSQGSVNGVFRTVLIANNVSLLNKEANAPIFSPDDVKDIKKLATRNDIFDLLGNSIAPSIYGHTWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNLAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDLQISDHVLRMHQFPASMDGGGIALDGSSGYGREDEADSESSIFVKYNRILHGSGPKRDTLTTKFLKKYIRYAKLRFQPELTNEASDQIATAYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKLRLNIKVTKTDVDAALKVLNFAIYHKELTEIEDREQEREGELERKRRADAENDGPDRDPKRKRGSTSDAMEMDDTSAAPSAVSLTPERIEAFNSRFGQHMRANRLDQISIADIEDVTNKGADSTYSSADILLLLEKLQGDNRVMIVDGMVHMIS* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4154 769 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Lja4g4154 769 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 4 761 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 626 641 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lja4g4154 769 SMART AAA_5 331 484 IPR003593 -
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 651 IPR027417 -
Lja4g4154 769 MobiDBLite consensus disorder prediction 647 699 - -
Lja4g4154 769 PANTHER DNA HELICASE 4 761 - -
Lja4g4154 769 Coils Coil 643 666 - -
Lja4g4154 769 Pfam MCM AAA-lid domain 552 635 IPR041562 -
Lja4g4154 769 Pfam MCM P-loop domain 276 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 MobiDBLite consensus disorder prediction 647 684 - -
Lja4g4154 769 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja4g4154 769 Gene3D - 135 189 - -
Lja4g4154 769 SMART mcm 104 639 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 Pfam MCM N-terminal domain 12 84 IPR027925 -
Lja4g4154 769 Gene3D - 3 99 - -
Lja4g4154 769 Pfam MCM OB domain 109 239 IPR033762 -
Lja4g4154 769 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g4154 769 Gene3D - 109 239 IPR012340 -
Lja4g4154 769 Gene3D - 271 658 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4154 Lja-Chr4 74966208 74971213 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4154 1 571 Core DNA Replication Machinery Family AT5G46280 78.646 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4154 K02541 - gmx:100811545 1259.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4154 4 74966208 74971213 Lja4g4154 4 74966208 74971213 ECH