Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4147 ATGGTGCAAACGGCTAAAGGCTCGTCGTCGTCGCAGAACAACGTTTCTCACTCCGCTTCTCCGGCCACCGTCTCCGCCTCCTCCCGCAAACTAGTGTTGAGGGTTAAATCAAGTGAGCAAATGAAGAGATCGGCGCAACAGACTAAGTCAACAAAGAAACCCAAAGCAAAGCAAAAGACGAGCAAACAAAGGATTGACGCTAACAAGCCAAAGAAGCCCCCCACTGCCTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGTGCAGAATCCAGATGTAAAGACAATGCGTGATATTGGCAAGTCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGACATAGCAACAGAAAAACGTGCAGAATTTGATAGAGCAATGACAGAATATAACAAGAAAATGGAAAGCGGTGAATTTGAAGATACTGATGAGGAGTTAGAGTTTTATGAGTAA 477 0.4319 MVQTAKGSSSSQNNVSHSASPATVSASSRKLVLRVKSSEQMKRSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMESGEFEDTDEELEFYE* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4147 158 SUPERFAMILY HMG-box 57 148 IPR036910 -
Lja4g4147 158 MobiDBLite consensus disorder prediction 1 73 - -
Lja4g4147 158 MobiDBLite consensus disorder prediction 1 47 - -
Lja4g4147 158 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 2 156 - -
Lja4g4147 158 SMART hmgende2 69 140 IPR009071 -
Lja4g4147 158 Pfam HMG (high mobility group) box 70 139 IPR009071 -
Lja4g4147 158 Gene3D High mobility group box domain 63 153 IPR036910 -
Lja4g4147 158 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 2 156 - -
Lja4g4147 158 CDD HMGB-UBF_HMG-box 70 135 - -
Lja4g4147 158 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 70 139 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4147 Lja-Chr4 74863974 74867971 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja4g4147 HMG_box 6.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4147 - - gmx:100809401 215.698