Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4145 ATGTTATCTCTAAAGTTTAGTTTGACTCTGGTCATAGTCTTTTCAATTGTAGCCTCAGTTTCATGTGCTGAGAATGTTGAAACTGAAGCTTTGAAAGCTTTCAAGAAGTCCATCACAAATGACCCAAATGGAGTCCTTGCAGATTGGGTTGACACCCACCATCACTGCAACTGGTCTGGGATTGCATGTGACTCTACAAATCATGTTGTTTCAATTACTCTGGCTAGTTTTCAGCTCCAAGGTGAGATTTCACCATTCCTTGGAAACATTTCTGGCCTTCAGCTTCTTGACTTAACTTCAAATTTGTTTACTGGGTTTATTCCCTCTGAGCTCAGTCTCTGCACTCAACTTTCTGAACTGGATCTTGTTGAAAATTCTCTCTCAGGACCAATCCCTCCTGCATTAGGAAACCTGAAAAATCTGCAGTATTTGGATTTAGGTAGTAACCTTTTGAATGGAACCCTCCCTGAGAGTTTATTCAACTGCACTTCTTTGTTGGGTATTGCTTTCAATTTCAACAACCTCACTGGGAAAATCCCATCAAACATTGGGAATCTTATCAACATTATACAAATTGTAGGGTTTGGGAATGCTTTTGTTGGGTCTATACCTCATTCCATAGGTCATTTGGGAGCTTTGAAATCTCTTGATTTTAGCCAAAACCAGTTATCAGGTGTGATACCTCCAGAGATTGGAAAGCTGACAAATTTAGAAAACCTACTACTGTTTCAAAATTCCTTGACTGGGAAAATCCCTTCTGAGATTTCTCAGTGTACCAATCTTATATACCTTGAGTTATATGAAAATAAGTTCATTGGAAGCATTCCTCCTGAGCTAGGAAGTCTAGTCCAATTGCTGACTTTGAGGTTATTTAGCAATAACTTAAACTCCACCATTCCATCTTCCATATTTCGGTTGAAATCGCTAACGCACTTAGGACTCTCAGACAATAACTTAGAGGGAACAATCTCTTCTGAGATTGGATCTCTGAGTTCCTTACAAGTGCTAACCCTGCATTTGAACAAGTTTACTGGGAAAATCCCTTCATCAATAACAAACTTGAGAAACTTGACATCTCTGGCTATTAGTCAGAATTTCCTTTCAGGTGAACTCCCTCCAGACCTGGGAAAGCTTCACAATTTGAAGATTCTTGTCTTGAATAACAACATTCTACATGGACCCATTCCCCCTAGCATTACCAATTGTACTGGCTTGGTGAATGTGAGTTTGTCTTTTAATGCTTTCACTGGGGGAATTCCTGAGGGCATGTCAAGGCTGCATAACCTCACTTTTCTGTCTCTTGCGTCAAACAAAATGAGTGGGGAAATCCCTGATGACCTCTTCAACTGCTCAAATCTTAGTACTCTAAGTCTAGCAGAAAACAACTTCAGCGGATTGATTAAACCTGATATCCAGAACCTGTTGAAACTCTCGCGTTTGCAACTACATACAAATTCTTTCACGGGACTGATCCCGCCGGAGATTGGAAACTTGAATCAACTCATCACTTTGACCCTTTCTGAAAATAGATTTTCAGGTCGAATTCCACCAGAACTTTCCAAACTTTCTCCCCTTCAGGGACTCTCCCTCCATGAGAATTTATTAGAAGGCACAATACCTGATAAACTCTCTGATTTAAAAAGACTAACAACACTTTCATTGAATAACAACAAGTTGGTTGGTCAAATACCAGATTCTATCTCAAGCCTTGAGATGCTTTCATTCTTAGACCTCCATGGAAACAAATTGAATGGATCCATTCCCAGAAGCATGGGGAAGCTTAATCATCTTTTAATGTTGGATCTCTCTCACAACGACCTCACGGGATCGATTCCGGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCAAACAACCACTTGGTGGGAAGTGTTCCACCAGAGCTGGGAATGTTGGTAATGACACAGGCCATTGATGTTTCAAACAACAATCTTTCGAGTTTCCTTCCTGAGACGCTTTCCGGGTGCAGAAATCTGTTCAGTCTTGATTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGGAAAAGCTTTTAGTCAGATGGATTTGCTTCAAAGCTTAAACCTTTCAAGAAATCATTTAGAAGGTGAAATCCCTGACACCTTGGTAAAGCTTGAGCATCTTAGTTCCCTGGATCTTTCTCAGAACAAATTGAAGGGAACCATTCCTCAGGGCTTTGCCAATCTTTCTAACCTGCTGCATCTCAATCTTTCTTTCAATCAACTTGAAGGTCCTATACCTACAACAGGAATCTTTGCACATATCAATGCATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCGAAACTCCAACGGCCATGCCGAGAGAGTGGTCATACACTATCCAAGAAGGGCATAGCCATTATCGCTGCACTTGGATCTCTTGCTATAATTCTACTTCTATTGTTTGTGATTTTAATTCTGAATCGACGCACCAGACTCAGAAATTCTAAACCAAGAGATGACAGTGTGAAATATGAACCAGGGTTTGGTTCAGCATTGGCTCTTAAAAGATTCAAGCCAGAGGAGTTTGAAAATGCCACTGGTTTTTTCAGTCCTGCCAATATCATTGGTGCTAGCAGCTTGAGCACAGTTTACAAGGGTCAATTTGAGGATGGCCACACTGTAGCCATAAAAAGATTGAATCTGCACCATTTCGCTGCAGATACTGACAAGATCTTCAAGAGAGAAGCCAGCACCTTGAGCCAGTTGAGACACAGGAATTTGGTTAAAGTAGTTGGGTATGCATGGGAGAGTGGGAAAATGAAGGCTTTAGCTCTAGAGTACATGGAAAATGGCAACTTGGATAGCATCATACATGACAAAGAAGTAGATCAGTCAAGGTGGACATTATCTGAAAGACTTCGAGTTTTCATTTCTATTGCTAATGGGTTGGAATATTTGCACTCCGGTTATGGTACTCCCATTGTGCACTGTGATCTAAAGCCTTCTAATGTCCTTTTAGACACAGACTGGGAAGCTCATGTCAGTGATTTTGGTACAGCTCGAATACTTGGTCTTCATCTACAGGAAGGTAGTACCCTTTCCTCAACAGCCGCTTTGCAAGGCACAGTTGGTTATTTGGCACCAGAATTTGCTTACATAAGGAAAGTAACTACTAAAGCGGATGTGTTCAGCTTTGGAATCATAGTAATGGAGTTTCTAACAAGAAGAAGGCCTACAGGGCTCTCAGAAGAGGATGACGGCTTGCCAATCACTTTGCGTGAAGTAGTCGCAAGAGCCCTTGCAAATGGAACTGAACAGCTTGTTAATATTGTGGACCCTATGCTGACCTGCAATGTCACAGAATACCATGTTGAAGTCTTGACAGAGCTCATTAAGCTTTCATTGCTCTGCACCCTCCCTGATCCTGAAAGTCGACCTAATATGAATGAGGTTCTATCTGCACTTATGAAGCTTCAAACAGAAAAATAG 3474 0.4108 MLSLKFSLTLVIVFSIVASVSCAENVETEALKAFKKSITNDPNGVLADWVDTHHHCNWSGIACDSTNHVVSITLASFQLQGEISPFLGNISGLQLLDLTSNLFTGFIPSELSLCTQLSELDLVENSLSGPIPPALGNLKNLQYLDLGSNLLNGTLPESLFNCTSLLGIAFNFNNLTGKIPSNIGNLINIIQIVGFGNAFVGSIPHSIGHLGALKSLDFSQNQLSGVIPPEIGKLTNLENLLLFQNSLTGKIPSEISQCTNLIYLELYENKFIGSIPPELGSLVQLLTLRLFSNNLNSTIPSSIFRLKSLTHLGLSDNNLEGTISSEIGSLSSLQVLTLHLNKFTGKIPSSITNLRNLTSLAISQNFLSGELPPDLGKLHNLKILVLNNNILHGPIPPSITNCTGLVNVSLSFNAFTGGIPEGMSRLHNLTFLSLASNKMSGEIPDDLFNCSNLSTLSLAENNFSGLIKPDIQNLLKLSRLQLHTNSFTGLIPPEIGNLNQLITLTLSENRFSGRIPPELSKLSPLQGLSLHENLLEGTIPDKLSDLKRLTTLSLNNNKLVGQIPDSISSLEMLSFLDLHGNKLNGSIPRSMGKLNHLLMLDLSHNDLTGSIPGDVIAHFKDMQMYLNLSNNHLVGSVPPELGMLVMTQAIDVSNNNLSSFLPETLSGCRNLFSLDFSGNNISGPIPGKAFSQMDLLQSLNLSRNHLEGEIPDTLVKLEHLSSLDLSQNKLKGTIPQGFANLSNLLHLNLSFNQLEGPIPTTGIFAHINASSMMGNQALCGAKLQRPCRESGHTLSKKGIAIIAALGSLAIILLLLFVILILNRRTRLRNSKPRDDSVKYEPGFGSALALKRFKPEEFENATGFFSPANIIGASSLSTVYKGQFEDGHTVAIKRLNLHHFAADTDKIFKREASTLSQLRHRNLVKVVGYAWESGKMKALALEYMENGNLDSIIHDKEVDQSRWTLSERLRVFISIANGLEYLHSGYGTPIVHCDLKPSNVLLDTDWEAHVSDFGTARILGLHLQEGSTLSSTAALQGTVGYLAPEFAYIRKVTTKADVFSFGIIVMEFLTRRRPTGLSEEDDGLPITLREVVARALANGTEQLVNIVDPMLTCNVTEYHVEVLTELIKLSLLCTLPDPESRPNMNEVLSALMKLQTEK* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4145 1157 Pfam Leucine rich repeat 525 583 IPR001611 GO:0005515
Lja4g4145 1157 Pfam Leucine rich repeat 649 706 IPR001611 GO:0005515
Lja4g4145 1157 Pfam Leucine rich repeat 712 754 IPR001611 GO:0005515
Lja4g4145 1157 Gene3D Ribonuclease Inhibitor 173 420 IPR032675 -
Lja4g4145 1157 SUPERFAMILY L domain-like 51 264 - -
Lja4g4145 1157 Gene3D Ribonuclease Inhibitor 421 516 IPR032675 -
Lja4g4145 1157 Gene3D Ribonuclease Inhibitor 517 624 IPR032675 -
Lja4g4145 1157 Gene3D Ribonuclease Inhibitor 625 790 IPR032675 -
Lja4g4145 1157 Gene3D Transferase(Phosphotransferase) domain 1 943 1157 - -
Lja4g4145 1157 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lja4g4145 1157 SMART LRR_typ_2 644 667 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 210 234 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 693 716 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 138 162 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 282 306 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 354 378 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 498 522 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 594 618 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 546 570 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 717 740 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 330 353 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 426 450 IPR003591 -
Lja4g4145 1157 SMART LRR_typ_2 741 766 IPR003591 -
Lja4g4145 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 105 159 - -
Lja4g4145 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 360 1153 - -
Lja4g4145 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 159 293 - -
Lja4g4145 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 295 365 - -
Lja4g4145 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 111 - -
Lja4g4145 1157 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Lja4g4145 1157 Gene3D Phosphorylase Kinase; domain 1 831 942 - -
Lja4g4145 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 989 1001 IPR008271 GO:0004672|GO:0006468
Lja4g4145 1157 SUPERFAMILY RNI-like 215 612 - -
Lja4g4145 1157 Gene3D Ribonuclease Inhibitor 24 172 IPR032675 -
Lja4g4145 1157 SMART LRR_sd22_2 717 743 - -
Lja4g4145 1157 SMART LRR_sd22_2 306 329 - -
Lja4g4145 1157 SMART LRR_sd22_2 546 572 - -
Lja4g4145 1157 SMART LRR_sd22_2 210 239 - -
Lja4g4145 1157 SMART LRR_sd22_2 378 404 - -
Lja4g4145 1157 SMART LRR_sd22_2 426 455 - -
Lja4g4145 1157 SMART LRR_sd22_2 138 161 - -
Lja4g4145 1157 CDD STKc_IRAK 870 1153 - -
Lja4g4145 1157 SUPERFAMILY L domain-like 547 780 - -
Lja4g4145 1157 ProSiteProfiles Protein kinase domain profile. 864 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4145 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 105 159 - -
Lja4g4145 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 159 293 - -
Lja4g4145 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 360 1153 - -
Lja4g4145 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 111 - -
Lja4g4145 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 295 365 - -
Lja4g4145 1157 SMART serkin_6 864 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4145 1157 Pfam Protein kinase domain 868 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4145 1157 SUPERFAMILY Protein kinase-like (PK-like) 843 1151 IPR011009 -
Lja4g4145 1157 PRINTS Leucine-rich repeat signature 597 610 - -
Lja4g4145 1157 PRINTS Leucine-rich repeat signature 717 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4145 Lja-Chr4 74842525 74846888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4145 8 1154 Receptor kinase-like Gene Family AT5G46330 53.859 0.0 1151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja4g4145 Pkinase 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4145 K13420 - gmx:100817960 1716.44