Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4137 ATGTCTGATGAACACCAGGACCTTGTCCCAGGAGGAGGATCTAACATGTACAGTGAATTAAAGCATCACATTTCTAATTCCTTTCCTTCAGCATATCATCATGATTCATCATCACAAGCCTTTGATGATCCACCTAATTACATGAGTTTCACTGAGTGTTTGCAAGGAAGAGTCATGGACTACAATTATTCACCATTCGGGAACACTTCTTTTGGCTTGTCTCCTTCCTCATCAGAAGCTTTTTCATCTGTTGATCAAGGAAATCAGAAGCCTCCAGAAGGAGATGTTGCAGGTGGTGGTGGTGGTGGTGGTGAAACCCTTGCAACTACTACCCTTAACTCATCTATCTCTGCTTCCTCATCCTCTGATGCTGGAGCTGAAGAAGATTCAGGAAAGAAAAAGAAAGATAATAACCAGGTCAAAGAAGAAGGAAATAACTCTGGGAACAAGGATAAAAAGAAAGGAGAGAAGAAGCAGAAGGAGCCAAGGTTTGCCTTCATGACTAAGAGCGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAATAGTCCATACCCTAGGAGCTACTACAGGTGCACTACACAGAAATGCACAGTGAAGAAACGCGTAGAGAGGTCATATCAAGACCCAACAACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACATCGCTAAGAGGGAATGCGGCTGGAATGTTCACACACCACTACTCTTTGCTAACCACACCACCCACTCCTCCACTCAGTCTCACAGCCGGGTCAAACTTCCCTCAAGATCTCTTTCTGCACCACCACATGCAGAACCAAACCCTCATCTTCAACAATAACAACAACAACAACAATGCTCCATCATCAACAAACTCCTCCATGTATTCACACTATAATAACAACTCTCTTCTTCAACATCAGCATCAGCATCAGCTTCCTCCTGATCAATATGGGCTCCTTCAAGACATTGTCCCTTCAATGTTCCTTAAACAAGAGCCATGA 1029 0.4373 MSDEHQDLVPGGGSNMYSELKHHISNSFPSAYHHDSSSQAFDDPPNYMSFTECLQGRVMDYNYSPFGNTSFGLSPSSSEAFSSVDQGNQKPPEGDVAGGGGGGGETLATTTLNSSISASSSSDAGAEEDSGKKKKDNNQVKEEGNNSGNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYQDPTTVITTYEGQHNHPVPTSLRGNAAGMFTHHYSLLTTPPTPPLSLTAGSNFPQDLFLHHHMQNQTLIFNNNNNNNNAPSSTNSSMYSHYNNNSLLQHQHQHQLPPDQYGLLQDIVPSMFLKQEP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4137 342 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 336 IPR044810 GO:0003700
Lja4g4137 342 MobiDBLite consensus disorder prediction 74 89 - -
Lja4g4137 342 Gene3D WRKY domain 153 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g4137 342 PANTHER WRKY TRANSCRIPTION FACTOR 81 15 336 - -
Lja4g4137 342 SMART WRKY_cls 175 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g4137 342 MobiDBLite consensus disorder prediction 74 165 - -
Lja4g4137 342 MobiDBLite consensus disorder prediction 106 125 - -
Lja4g4137 342 ProSiteProfiles WRKY domain profile. 170 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g4137 342 SUPERFAMILY WRKY DNA-binding domain 167 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g4137 342 MobiDBLite consensus disorder prediction 126 165 - -
Lja4g4137 342 Pfam WRKY DNA -binding domain 176 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4137 Lja-Chr4 74780227 74782375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4137 29 342 WRKY Transcription Factor Family AT4G18170 48.287 3.06e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g4137 WRKY 2.7e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4137 4 74780227 74782375 Lja4g4137 4 74780227 74782375 ECH
Lja6g2773 6 56818822 56822263 Lja4g4137 4 74780227 74782375 ECH