Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4136 ATGGATGAACCTCTGCTTCAATATTTCAGCCCCAGAAAGAAGCCATCACCGTTGTCATTGACACCACATCTCTGTCCGTTACCGGAGAATGACGAGGTGGTTATCCCCATCACACCTTCGGAGTTCAAAGATCGCCTCATCTTTGGTCCTTCTTCAATGGACCACCCTTCACCTTTGGCTGATGCCTTAACACTCTCTCGGAATTCACCAAAATCTTCTTCTTCTTCTTCCACATCGCATGATTTTGCATCTTCTGCACCACCGCAATACTCACAGCAACAACAACAACCACTTGCTTCATGGCTCGTTGACCCGAATTATCCATGGCGGAAAACCAACCTCCACCGCTCCAAAACCGCACCGGCTATGGCTGTTATCAGCGATTTGAATCACCCGGCAACGGTGAAGAGACCCCAGTTTGCTAGCCAATCGATTGTTTTCCAGGCTGTGGTTCTTCTCGTTCTGTATTTGGCATTGGGGGTGGTGATTTACTGGTTCAATCGGCATAATTTTGTAGGTTCTGAAACTCACCCTATAGTGGATGCTTTGTATTTTTGTATAGTGACAATGTGCACTATAGGATATGGTGATATAACTCCCAATAGTACAGCAACAAAGCTTTTCTCTATTTTGTTTGTGTTGGTGGGTTTTGGTTTTATTGATATATTGCTCAGTGGGATGGTTAGCTATGTTCTTGATTTGCAGGAGAATCATTTGTTGAGGGCGGTGAAGGGTAGGGGTGAGAAGGATGGGAAGTCATATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTTGGATTGGCATTAGGGGTTGTGGTGCTTTGTATTGGGCTTGGTGTTGGGGTTATGCATTTTGTGGAAAGGCTTGGATGGGTAGATTCTTTTTATCTTTCAGTTATGTCTGTTACTACTGTTGGCTATGGTGACCATGCTTTCAAGACTATGCATGGTAGAATCTTCGCTGCAATCTGGTTGCTTGTGTCGACGCTTGCGGTGGCCCGAGCTTTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGGTTCTTGGTCAGGATATGACTGTGGCTGAGTTTCTTGCTGCAGATATAGACAACAATGGATTTGTCAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGGAAAGTAACAGAGAAGGACATCATGGAGGTTAGTGAGAAGTTTGATAGACTAGATGCAGGAAACTGCGGAAAAATAACACTTGGTGATCTTATGGAGGGTCATAATGTATGA 1293 0.4439 MDEPLLQYFSPRKKPSPLSLTPHLCPLPENDEVVIPITPSEFKDRLIFGPSSMDHPSPLADALTLSRNSPKSSSSSSTSHDFASSAPPQYSQQQQQPLASWLVDPNYPWRKTNLHRSKTAPAMAVISDLNHPATVKRPQFASQSIVFQAVVLLVLYLALGVVIYWFNRHNFVGSETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHLLRAVKGRGEKDGKSYIIDVKKGRMRIRMKVGLALGVVVLCIGLGVGVMHFVERLGWVDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVTEKDIMEVSEKFDRLDAGNCGKITLGDLMEGHNV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4136 430 SUPERFAMILY Voltage-gated potassium channels 259 366 - -
Lja4g4136 430 MobiDBLite consensus disorder prediction 62 89 - -
Lja4g4136 430 Gene3D - 142 243 - -
Lja4g4136 430 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Lja4g4136 430 PRINTS Two pore domain K+ channel signature 307 316 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja4g4136 430 PRINTS Two pore domain K+ channel signature 188 216 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja4g4136 430 SUPERFAMILY Voltage-gated potassium channels 143 238 - -
Lja4g4136 430 SUPERFAMILY EF-hand 367 427 IPR011992 -
Lja4g4136 430 Gene3D - 255 363 - -
Lja4g4136 430 PANTHER TWO-PORE POTASSIUM CHANNEL 3 93 424 - -
Lja4g4136 430 MobiDBLite consensus disorder prediction 58 89 - -
Lja4g4136 430 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g4136 430 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 93 424 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja4g4136 430 Pfam Ion channel 152 231 IPR013099 -
Lja4g4136 430 Pfam Ion channel 275 344 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4136 Lja-Chr4 74760784 74766987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4136 3 427 Ion Channels AT4G18160 62.670 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4136 K05389 - gmx:100804249 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4136 4 74760784 74766987 Lja4g4136 4 74760784 74766987 ECH