Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4126 ATGGAGGCTCATTCTAACTTGAAGAAAAGAGAGTCTATCTTAATTTCTGATGAGAATCCTGCTGCATTTAAGAAGAGGAGATCAAGAATGGGAAGCCATGTGGACCCTCTTGTAAGAAAGCAGCCAGAAGATAACTTCACTGGAGAAGAAAAATACAGTGAGGATGAGGATAGCAATGATGCTGCTGAAAAGGATCAAGAAAAAGATGAAGGGGATGATGATGTGGTTGATGATGATCAAGATAAAGTAGAGTTCTTATTAGGTGATGATGGTCCAACTACTGCAACAGAGGAGGGGGAAGTTCACAATGGTCTGTTCACGAAAGATGAAGATGAAAAGAATATGCCTCCTGCGCGACATTTCAGCCATGGATGTTACTTAATCCAAGGAATGATGGCCCATGGAATGGAAGACTACGTTTTTGCTAAACACAAGAAGCTCAATGGTTATGAGTTGGGACTGTATGCAATATTTGACGGTCACGCAGGTCGTGATGTTGCAAAATACTTGCAAAGCCATCTGTTCGAAAATATACTAAATGAGCCTGATTTCTGGAAAAATCCAGTCCATGCTGTTAAGAAAGCATGTAAAGCTACAGATGAAGAGATTTTAGAAAACATAGCAGATTCACGAGGAGGATCAACAGCTGTTGCAGCAATACTAATTAATGGAGTAAAGCTACTGGTTTTCAACGTTGGTGATTCTCGAGCAATATCATGTAAAAATGGTGTTGCTAAACAACTTACTGAGGATCATGAACCAGAGAAGGAGAGAGATCTCGTTGAGAGCAGAGGAGGCTTTGTGTTGAATAGACCTGGGAGTGTCCCAAGAGTGGATGGCATATTAGCAATGACGCGAGCATTTGGAGATGGAAATTTGAAGGACCACATTACTGCAGAACCAGATGTGATGATTAGGAAGATTGATGAGGACACTGAATTTATCATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGGCAAATCAAGAGGCTTGTGACTGTATCAAGGATATTGAGGATGCCAAAAATGCAGCTAAGAAGTTAGTTAAAGAAGCCAAATCTCAGGGAAGCTATGATGATATTTCGTGCATAGTAGTTAAATTCTAG 1107 0.4065 MEAHSNLKKRESILISDENPAAFKKRRSRMGSHVDPLVRKQPEDNFTGEEKYSEDEDSNDAAEKDQEKDEGDDDVVDDDQDKVEFLLGDDGPTTATEEGEVHNGLFTKDEDEKNMPPARHFSHGCYLIQGMMAHGMEDYVFAKHKKLNGYELGLYAIFDGHAGRDVAKYLQSHLFENILNEPDFWKNPVHAVKKACKATDEEILENIADSRGGSTAVAAILINGVKLLVFNVGDSRAISCKNGVAKQLTEDHEPEKERDLVESRGGFVLNRPGSVPRVDGILAMTRAFGDGNLKDHITAEPDVMIRKIDEDTEFIILASDGLWKVMANQEACDCIKDIEDAKNAAKKLVKEAKSQGSYDDISCIVVKF* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4126 368 MobiDBLite consensus disorder prediction 49 78 - -
Lja4g4126 368 Coils Coil 335 355 - -
Lja4g4126 368 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 65 368 - -
Lja4g4126 368 PANTHER ALPHABET, ISOFORM E-RELATED 65 368 - -
Lja4g4126 368 SMART PP2C_4 112 366 IPR001932 -
Lja4g4126 368 CDD PP2Cc 121 368 IPR001932 -
Lja4g4126 368 Gene3D - 118 368 IPR036457 -
Lja4g4126 368 ProSiteProfiles PPM-type phosphatase domain profile. 122 368 IPR001932 -
Lja4g4126 368 MobiDBLite consensus disorder prediction 1 48 - -
Lja4g4126 368 MobiDBLite consensus disorder prediction 1 78 - -
Lja4g4126 368 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Lja4g4126 368 SUPERFAMILY PP2C-like 119 368 IPR036457 -
Lja4g4126 368 Pfam Protein phosphatase 2C 150 361 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4126 Lja-Chr4 74653479 74657354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4126 119 368 PP2C-type Phosphatase Gene Family AT4G28400 58.964 5.34e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4126 - - gmx:100814772 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4126 4 74653479 74657354 Lja4g4126 4 74653479 74657354 ECH