Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4125 ATGGAAGCAATAGTTTCTGGGTTGTTGATCTCCATCTTGGACAGGCTAGCAACCAGAGCTTTTCAGAACATTTCCATGGCAAGAGGGCTCCATGCTGATGTGGCCACCCTCCAAGACTCTCTCACAATCATCAGTACTTTCCTTGTGGATGCTGAGAACAAGCAAACTCAGAACCAGGCCATATTGCTCTGGCTGAACCAACTCAAAGATGTTTTCTATGATGCCAGGGACATCCTTGATGAGATTGAATGTGAGACTTTGAGGAGCCAAGTTGTGAACAACACACATGGTGGAGGAGGCTTCACCAGAAAGGTACAACGTTTCTTCTCATCCTCTAACCCTTTTGCATCTCGTGTTAAGATGGCCCGCAAGATCAAGGGCATCAAGCAGAGGATTGATGAGATAGCTTCTCTTAGGATGAAGCTAGGTCTCTCTGAGAGCCATTCATGTAGTAGTAGTAGTACTAGTGTACCACTCAATCATAAAATGGCTTGGAGAGAGACTCATTCTCATGTTAGGCCTTCCCATGTGATTGGTAGAGATGAGGAGAAAGAAAAAATCATTGTGTCCTTGATGGCTCCACCATGTGATGGTGAGGAGATTGATGTTGTTCCAATTGTTGGAATTGGAGGGCTGGGGAAGACCACACTTGCTCAATTAGTTTACAATGATGATAGGGTGATTGAGAATTTTGATTTGCGTATGTGGGTGTTTGTGTCTGATGATTTTGATGTTAAGAGGCTAGTGCTAGAGATTCTGAAAGCTATGCATGGAGTAGATGTAGATGCTCACAACTATAGTTTTGATCAATTACAGAACCTACTACGCGAGGGATTAGAAGGGAAGAAATTTCTACTTGTTCTAGATGATGTCTGGAATGAGGATTATAGATTGTGGCTTGAATTGAGAAATATTTTACTAGGTATCCATGATGAAGGTAATAAACCCGGTAACAAGATTATCACCACCACTCGGAGTGACAAGGTTGCTTCGATAATGGGGAATGTTTATAAACACAACTTGAGATATCTCCCTGAAGAAGATTGTTCAAAGCTGTTTGTTAAGTGTGCATTCCCAGCAGGAGATGCGAATCAGCATCCAAGGCTTTTAGAAATCGGGAAGGAGATTGCTAGAAAGTGCAAAGGGTTACCCTTGGCAGTGGTGAGTTTAGGATGCCTGCTTTACTCAAAATCGGATGAAAGGGAGTGGAAGAAAATAAGAGATAGTGAAATTTGGAAAATGAACCAGCAAGATGATGGCATTTTGGCTGCATTGAAACTGAGCTATAATCACTTGCCATCTGAAATGAAACAGTGTTTCTCTTATTGTTCAATTTTTCCTAAGGGTTATGAGTATACTAATTTGGAAATGATTTCATTGTGGATGGCTCATGGACTGCTACAAACCAAAAATGAAGATGAAGAGCCAGAAGATCTTGGGGAATTTTATATTAAGGAGTTAGTTTCAAGATCTTTCTTTGAAGGTGCACCTGAAGAACAAGTGGTTATTGATGGTCTTATTTCTGAAGAACTTGAGCTTCTAGGCATCTCCATCTTCAAAATGCATGATGTTATTCATGACCTTGCTGTGTCCACAATGCAAAATGAAAGGACAGTAGTGAAATTCAATTCAACAAATGTTAAAGAAAAGGTGCATCATTTATCATTTGCAGACAGTGGTGCAGGAGTTCCTACTTTTGGTCCAAAGTTGAAAAAGGTCCGAACCATTGGATTCTGGCATGCAGGTAAAAGTGCACCTGCAATCACTAAACCATTTGTGGAATGGATCTCCAAGAAATTCAAGTACCTCAGGGTGTTGAACATACAAGGATCAAATTTTCAATTCTTGCCAGATTGTTTCGACAAAATGAAGCATTTGAGGTATCTTGATCTAAGCTATTGCCAGAGGATGGAAAAACTCCCAGATTCAATTTGCAAGCTTCAAAGTCTGGAGGTTTTAAATCTATGTAGATGTGTAGCACTTAATATATTCCCAAAAAATTGA 2004 0.4037 MEAIVSGLLISILDRLATRAFQNISMARGLHADVATLQDSLTIISTFLVDAENKQTQNQAILLWLNQLKDVFYDARDILDEIECETLRSQVVNNTHGGGGFTRKVQRFFSSSNPFASRVKMARKIKGIKQRIDEIASLRMKLGLSESHSCSSSSTSVPLNHKMAWRETHSHVRPSHVIGRDEEKEKIIVSLMAPPCDGEEIDVVPIVGIGGLGKTTLAQLVYNDDRVIENFDLRMWVFVSDDFDVKRLVLEILKAMHGVDVDAHNYSFDQLQNLLREGLEGKKFLLVLDDVWNEDYRLWLELRNILLGIHDEGNKPGNKIITTTRSDKVASIMGNVYKHNLRYLPEEDCSKLFVKCAFPAGDANQHPRLLEIGKEIARKCKGLPLAVVSLGCLLYSKSDEREWKKIRDSEIWKMNQQDDGILAALKLSYNHLPSEMKQCFSYCSIFPKGYEYTNLEMISLWMAHGLLQTKNEDEEPEDLGEFYIKELVSRSFFEGAPEEQVVIDGLISEELELLGISIFKMHDVIHDLAVSTMQNERTVVKFNSTNVKEKVHHLSFADSGAGVPTFGPKLKKVRTIGFWHAGKSAPAITKPFVEWISKKFKYLRVLNIQGSNFQFLPDCFDKMKHLRYLDLSYCQRMEKLPDSICKLQSLEVLNLCRCVALNIFPKN* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4125 667 Gene3D - 9 126 - -
Lja4g4125 667 Gene3D Ribonuclease Inhibitor 584 667 IPR032675 -
Lja4g4125 667 PANTHER DISEASE RESISTANCE PROTEIN RP 37 653 IPR044974 GO:0006952
Lja4g4125 667 Pfam Leucine Rich Repeat 625 647 IPR001611 GO:0005515
Lja4g4125 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 443 IPR027417 -
Lja4g4125 667 Pfam Rx N-terminal domain 11 101 IPR041118 -
Lja4g4125 667 Pfam NB-ARC domain 181 430 IPR002182 GO:0043531
Lja4g4125 667 Gene3D - 343 433 IPR042197 -
Lja4g4125 667 SUPERFAMILY L domain-like 520 664 - -
Lja4g4125 667 PRINTS Disease resistance protein signature 621 637 - -
Lja4g4125 667 PRINTS Disease resistance protein signature 203 218 - -
Lja4g4125 667 PRINTS Disease resistance protein signature 278 292 - -
Lja4g4125 667 PRINTS Disease resistance protein signature 380 394 - -
Lja4g4125 667 PANTHER OS05G0414200 PROTEIN 37 653 - -
Lja4g4125 667 Gene3D - 161 338 IPR027417 -
Lja4g4125 667 CDD RX-CC_like 2 137 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4125 Lja-Chr4 74648127 74651714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4125 200 665 WRKY Transcription Factor Family AT5G45050 22.797 6.64e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4125 - - lja:Lj4g3v0286230.1 1321.61