Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4111 ATGGTGATAATCTCGCTTGGTGGTTCCGATGATGGTGAAGGACCAAGCAACCCGACCCAGAAGCGACGTAGAGTAGAACCAGACGAAGAGGAGGAAGAAGAACAAGAACAAGGGCAACAATCACAACCACAAGCCTTTGAAATGGAAGAAGACCCTGAAATTGCGACCACCCAAGAAGTAGATCACAACAACGATGGAAATGGAGAAGCTGAAGACTCGAACGGTGTCTCAGGATACAGTGCTGCCAGGGAGAGGGAGAGGTCTGTTCCTGTCATAATTACTGACCCTGATGTTCTTGATTGTTGCATTTGCTATGAGCCCTTGAGTGTTCCTGTCTTTCAGTGTGAGAATGGGCATGTTGCTTGCTCTAGTTGCTGTGCCAGACTCAGGAACAAGTGTCCCATGTGCTTGATGCCCATTGGCTATAACCGTTGCCGAGCTATGGAGAAGTTGCTGGAATCTATTAAAATATCATGTCTGAATGCAAAATATGGCTGTAAAGAGGTGTTTAGTTACAGTATGAAAAGTGACCATGCGAAGGAATGCGTCTATATCCCGATTTTATGCCCGCATACAGATTGTGACTTTGTTGCCTCATCGAAGGAGTTATCCCTCCACGTCAGCCATAGACATGTAGGCTCTGGAGTACAGTTTACATATGATAAATTTATCACTGTCTTTCTAAATACTGACCAAAAAGAAATTGTTCTCCAAGAGCAAAATGATGCTCATCTGTTCATTGTTCACAATAAACTTGAGCTTCTGGGGAACACAGTCCATATTAGTTGCATTGGCCCTAAATCTATGGCAGGGTTTCATTATGATATCTTGGCTAGGTCTCGAGGAAGCACTCTAATATTGCAATCTGTTACCAAGATCATTCAAGCCATTGGCCATGCTTCTTCAAGTGTGTTCCTTTTGATTCCATCCAAGTTTTTTGGTTGTGGACAGCTCAAACTAGATATTCGCATAAAGTCACAACATTAA 987 0.4326 MVIISLGGSDDGEGPSNPTQKRRRVEPDEEEEEEQEQGQQSQPQAFEMEEDPEIATTQEVDHNNDGNGEAEDSNGVSGYSAARERERSVPVIITDPDVLDCCICYEPLSVPVFQCENGHVACSSCCARLRNKCPMCLMPIGYNRCRAMEKLLESIKISCLNAKYGCKEVFSYSMKSDHAKECVYIPILCPHTDCDFVASSKELSLHVSHRHVGSGVQFTYDKFITVFLNTDQKEIVLQEQNDAHLFIVHNKLELLGNTVHISCIGPKSMAGFHYDILARSRGSTLILQSVTKIIQAIGHASSSVFLLIPSKFFGCGQLKLDIRIKSQH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4111 328 Pfam Seven in absentia protein family 144 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja4g4111 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 326 IPR044286 -
Lja4g4111 328 SUPERFAMILY RING/U-box 100 143 - -
Lja4g4111 328 MobiDBLite consensus disorder prediction 59 74 - -
Lja4g4111 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 207 IPR013083 -
Lja4g4111 328 ProSiteProfiles Zinc finger RING-type profile. 101 136 IPR001841 -
Lja4g4111 328 SUPERFAMILY TRAF domain-like 154 324 - -
Lja4g4111 328 MobiDBLite consensus disorder prediction 1 82 - -
Lja4g4111 328 ProSiteProfiles Zinc finger SIAH-type profile. 154 212 IPR013010 GO:0008270
Lja4g4111 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4111 Lja-Chr4 74361616 74364356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4111 97 211 C3H Transcription Factor Family AT2G41980 34.188 3.00e-19 84.7