Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4109 ATGGCCACCATATCTGCAACATTATGCTACCTCTTAGTTCCAATAATTTTATCTTCATGCCACACAACATTATGTGCAACAGTGGTGGAAGATCTCAAAAACTTGCACCACCCCCCAGATTTCAACACTACAATCATGAGCAACTGTCTCAAGAACCCATCTCTTAGATACTGCAGTTCCAACCCCATGGACCTTGATGAAATATTCAAATACACTATTGTTGCTAGCCATTTATGCAATGAGTCAAAGAACCCCAATTGTGTTGAAACATTCCCCAAAGTTGATCTCAGAAACCGCCCGAATATCGCGCCTCTTTACTTGTCATTCAGTTTCTTTTGGAAGTACTGTCCCTTGACCATTCTCTCCATTGATTTGTCCAACAACTCCATGAAGGGTGGTTTTCCAATTGATGTTCTCAACTGCACTCAAATCCATTCTCTTGACTTAAGTTTCAATCAACTTTCTGGTGACATTCCAATTGAAAGTTTCTCTCCCCTTACCAACCTCACCTTTCTGAACCTCTCCTATAATTGCTTTTCAGAGAGTGAATTATCAAATTCCCAATTCTTCAAAAGGTTTAATGCTTCTAGTTTTCTTCATTCTGGTGCTGTCCCAGATCACAAAAGGTTCACAGTGAAAATAATCATTCTACTAGTTGGTTTTCCCATCTTTGTTGTTTTGATGGTGATTTTCTTTGGATGGCTTTGTTTCCAAAGGCCTGATTTTCTACCAAGAGCATTTAAAAGAAGTAGGAGGTTTACACCAGCAATTCTGAAAGCAATTACTTCTGGTTTTTCGAATCAAAATTTGGTGGGGAAGAGTGATGTTGTTCACATATACAAAGGGATCTTGAGAGATGGTACTGAAGTGAAGATTGAGATGTACTTTGATGACATGTCAAGGGAAAGATATAAAGAATTTGTTGAAGAGTGTAAGGTTCTGTGTGAGCTGGACCACAAGAACATTGTTAGAGTTATAGGATGGTGCAGAAGCAGGAAATTCAGGGCTATTGTTACAGATTGGACAGAAGAAGAAAATATTGAAATGTGGTTATCAGGGTCTGCTCCACCATGGAATCATAGGCTGAAAGTGTTGATGGGAGTTGTGGAATGCATGCTCTATCTGCAGGAGGAATGGCCTGAAGTTGACTATGAACTCAAGACAAGTAGTGTTTTAGTATCGGAGTATTTGGAACCATTAATTTCAAGGTTCAAAGTTGAAGAGCAAAACAGCAGTAGAAGGAAGATATGCAAGTTTGGGGTGTTTCTTCTAGAGATGATGATAATCAGGAGGGATCAAGAGGAGTTTGATGGTGGTGATGCTGGATTCATTAGGTTCATAAGAACCCTTCATCCTGAAGACTTGTATGAGATGATTGATGAGAGAATGGAAGTTACTGAAACAACTTTAAATCAAGTTAAACAGGTGCTATCCCTTGGACTAATGTGCATAGCCATAGACCAATCAAACAGTGAACAACCAAGTTTAGCCCAGATATTTAATACTCTATCAAGAGCCTACAACGCAAATCAAAAAGTATTTCATGGAGATAGAGTTAAGGGACACAAGCACATTCAATTCAGATAA 1587 0.3894 MATISATLCYLLVPIILSSCHTTLCATVVEDLKNLHHPPDFNTTIMSNCLKNPSLRYCSSNPMDLDEIFKYTIVASHLCNESKNPNCVETFPKVDLRNRPNIAPLYLSFSFFWKYCPLTILSIDLSNNSMKGGFPIDVLNCTQIHSLDLSFNQLSGDIPIESFSPLTNLTFLNLSYNCFSESELSNSQFFKRFNASSFLHSGAVPDHKRFTVKIIILLVGFPIFVVLMVIFFGWLCFQRPDFLPRAFKRSRRFTPAILKAITSGFSNQNLVGKSDVVHIYKGILRDGTEVKIEMYFDDMSRERYKEFVEECKVLCELDHKNIVRVIGWCRSRKFRAIVTDWTEEENIEMWLSGSAPPWNHRLKVLMGVVECMLYLQEEWPEVDYELKTSSVLVSEYLEPLISRFKVEEQNSSRRKICKFGVFLLEMMIIRRDQEEFDGGDAGFIRFIRTLHPEDLYEMIDERMEVTETTLNQVKQVLSLGLMCIAIDQSNSEQPSLAQIFNTLSRAYNANQKVFHGDRVKGHKHIQFR* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4109 528 SUPERFAMILY L domain-like 101 196 - -
Lja4g4109 528 SUPERFAMILY Protein kinase-like (PK-like) 244 503 IPR011009 -
Lja4g4109 528 Pfam Protein tyrosine and serine/threonine kinase 269 421 IPR001245 GO:0004672|GO:0006468
Lja4g4109 528 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 8 527 - -
Lja4g4109 528 Gene3D Phosphorylase Kinase; domain 1 242 341 - -
Lja4g4109 528 Gene3D Ribonuclease Inhibitor 17 212 IPR032675 -
Lja4g4109 528 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 527 - -
Lja4g4109 528 ProSiteProfiles Protein kinase domain profile. 265 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4109 Lja-Chr4 74353240 74355246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4109 120 393 Receptor kinase-like Gene Family AT5G46330 29.677 2.98e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja4g4109 PK_Tyr_Ser-Thr 1.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4109 - - gmx:100779045 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4109 4 74353240 74355246 Lja4g4109 4 74353240 74355246 ECH