Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4100 ATGGAGTGGAAATGGAAGACGAAGAAGCAACCACCTCAACCTCGGTTGCAGCGCTTGAACGCCAAGAGGAACATCGATTACGAGCCCCCAACTCCAACCCCACCTTCTTCAACTTCTTCCTCTCCTCCCTTCCACTCCCTCTACGATCCAACCAGCCTCCGTGTCATGGGCATCGACGGCGAATTCGACCGCATCTTTCAAAGCTTGGGTCTCTCCGGCCCCGAAGATTTCGCTATCCCCACTGCTGATTGGGAAGCTCGCAAGTCTCGTTCTGCTGATTCCAACCCCAATCCCAAACCCAATCGCAATTGCAATCGCAATGTTCCTGTTACTGTTCTTCCAGTTTCGCCCAAATTGGAAACCCCTGACCTAAGAAATGGGAATTTTGGAGATGGGGTTTGTGGAATCAAGGGTTTTAGGCCACCCCTTTTGGCTACAACTGCTGGTGGTGCTGGTGTTGTTCGTTCTCCGTCTTCTTCTGGTGAGCATGATGGTAGGGGAGGTGTGGGTAGGCTCAGATTTGGGGAAAGGAGCGTGGTTTTTACTGATTCTGGTTCGTTCTCTACTTCCCATGATGATGATAGTGATGTTGGTGGTGAGAGAGGTTGTTCTGCTTCTTCTTCTGCAAATGGGTGGGTTACACTACCTTTCTCCTCGTGGCAGAAGGGTGATCTCTTGGGAAAAGGGTCCTTTGGAACTGTGTATGAAGGCTTCACTGATGATGGAAACTTTTATGCGGTAAAGGAGGTTTCTTTGCTGGATGAAGGTACCCAGGGAAAACAGAGCGTTCTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCGGTTTAAACATGACAACATAGTTCGATATTTTGGCTCACACAAGGACGAAAGTACACTATATATCTTCCTTGAGTTTGTGTCAAAAGGGTCATTGGCTAGTCTCTATCAAAAGTATCGCTTGAATGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAATGGCCTGAAGTATCTTCATGATCGTGATATTGTCCACAGGGATATCAAGGGTGCAAATATACTGGTAGATGTAAGCGGGGCAGTAAAGCTTGCAGATTTTGGATTGGCGAAGGCGACAAAATTGAATGATCTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCACCCGAGGTTGTTAACTTAAAGAACGAAGGTTATGGCCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTTTAGAGTTGTTGATAAGGCAGCCTCCTTACTCCGACTTGGAAGGAATGCAAGCAATATTTCGGATTGGCAAGGGTGAACCTCCACCTATTCCTGAACATTTATCTGAAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAATAAACGTCCAACTGCAGCTCAGCTGTTGGATCATCCATTTATTAGGATGTCTGCAAGTCAAGCTTCTCAACGTACTTAA 1455 0.4605 MEWKWKTKKQPPQPRLQRLNAKRNIDYEPPTPTPPSSTSSSPPFHSLYDPTSLRVMGIDGEFDRIFQSLGLSGPEDFAIPTADWEARKSRSADSNPNPKPNRNCNRNVPVTVLPVSPKLETPDLRNGNFGDGVCGIKGFRPPLLATTAGGAGVVRSPSSSGEHDGRGGVGRLRFGERSVVFTDSGSFSTSHDDDSDVGGERGCSASSSANGWVTLPFSSWQKGDLLGKGSFGTVYEGFTDDGNFYAVKEVSLLDEGTQGKQSVLQLQQEISLLSRFKHDNIVRYFGSHKDESTLYIFLEFVSKGSLASLYQKYRLNDSQVSAYTRQILNGLKYLHDRDIVHRDIKGANILVDVSGAVKLADFGLAKATKLNDLKSSKGSPYWMAPEVVNLKNEGYGLAADIWSLGCTVLELLIRQPPYSDLEGMQAIFRIGKGEPPPIPEHLSEDARDFILKCLQVNPNKRPTAAQLLDHPFIRMSASQASQRT* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4100 484 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 7 102 - -
Lja4g4100 484 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 7 102 - -
Lja4g4100 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Lja4g4100 484 ProSitePatterns Protein kinases ATP-binding region signature. 226 248 IPR017441 GO:0005524
Lja4g4100 484 SMART serkin_6 220 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4100 484 MobiDBLite consensus disorder prediction 85 109 - -
Lja4g4100 484 MobiDBLite consensus disorder prediction 1 48 - -
Lja4g4100 484 Pfam Protein kinase domain 221 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4100 484 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 134 480 - -
Lja4g4100 484 SUPERFAMILY Protein kinase-like (PK-like) 217 474 IPR011009 -
Lja4g4100 484 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 134 480 - -
Lja4g4100 484 ProSiteProfiles Protein kinase domain profile. 220 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4100 484 Gene3D Transferase(Phosphotransferase) domain 1 218 484 - -
Lja4g4100 484 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4100 Lja-Chr4 74279002 74285608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4100 8 92 MAP Kinase Kinase Kinase AT4G08500 42.391 1.28e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja4g4100 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4100 - K13414 lja:Lj4g3v0320510.2 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4100 4 74279002 74285608 Lja4g4100 4 74279002 74285608 ECH
Lja4g4100 4 74279002 74285608 Lja6g3335 6 61556867 61560735 PCT