Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4099 ATGGAGATTGATCTCTCTTTGAAGATAGAAAGTGATGATGAGCAAAATGAAGAAGAGGAGAAGGTGGGTGAGTTAGTGAAAGAGGATGACATGGAAGAAATGGTACATGAAGTCCCCACAGCTGGTGAAGTTGAAGAAGATGATGCATCAGTTGTAGAAATATCTTTGCAAGATAACACAAAAACAAGAGAGTTAATTGACTTGAAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTCCTGAGAAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAATGAAATTTTCAATCATCCAGGAAAATAATAAAAGAAAGGATCCTCAATTTTCTCTCTCACTTCAAGACAATGCAACCGCCACCAGCGAGGAAGGACCATCAAGGATTCTTGAGATCTTTAGCAAAAATATTCAAAGATCTCCATCTCTACCAAACAATAGTGCTAATGACGATAGTATGGACGAGAATGAATTGGGTTTGTCACTGAGGTTGCAGACAAGCACAAGTCAAAAAGAAACGGAGGAAAATAAGGAAGAAAAAAGAGAGCAATTAGTGGCAAGTTTTGCATCACCACCAGTGCAGAATAATAAATTACAGCGGACACATGACTTGCCGGGTATTACAGCACATGCTGCTGCTGCTAACAGAAAGGCTAGGGTTTCAGTTAGAGCAAGATGTGAAGCCGCCACAATGAATGATGGATGTCAATGGAGAAAATATGGCCAGAAAATTGCTAAAGGAAATCCATGTCCACGAGCTTACTATCGTTGCACCGTAGCCCCAGGCTGCCCAGTCAGGAAGCAGGTACAAAGATGTATAGATGACATGTCCATACTAATTACAACATACGAAGGAACACACAACCATCCACTCCCTGTTGGTGCAACTGCCATGGCTTCTTCCGCAGCTTCCTTCATGTTGCTAGACTCAAGTAACCCCATTTCATATGGCACATCAAGTTTCACATCTCAAGCAACTCTTCCTAATTACAACACGTTCCACCCTTTAAACCCACCTTCCAACATTAGAAGCATAAACCCCAATGATCCATCTCAAGGAATTGTTCTTGATCTCACCCACAACCTCTCTGAACCCATACGTTTCTCTTCTGGTAGCTCCTCCAAGATGACCACTGAGCCTCGTTTTTCTTGGATGCAAAACAACAAAAGCAGTGGTATTGCAATGAATAACTTTCACAACTCTAGAACACTATTGGATCATGATAGGATTTGGAAAGGAGAAGAAAGTAAGAAGCCATTTGATGACAATAATATGTCCACAATTGCCTCAGATCCTAAATTTAGGAATGCTGTTGCAGCCGCCATAACTTCACTCATGAATAAAGAAAGCCACACTACTCATCCCATAGGGGCTTCCTTTGGTCATAGGAGTGGCCAAAATGGTGGCTCAAGTAGCAACAACAATTGGGTCATTGATTCTCTCTCAAAAAATGGTAAGCCCACTTGA 1479 0.4131 MEIDLSLKIESDDEQNEEEEKVGELVKEDDMEEMVHEVPTAGEVEEDDASVVEISLQDNTKTRELIDLKMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSIIQENNKRKDPQFSLSLQDNATATSEEGPSRILEIFSKNIQRSPSLPNNSANDDSMDENELGLSLRLQTSTSQKETEENKEEKREQLVASFASPPVQNNKLQRTHDLPGITAHAAAANRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASSAASFMLLDSSNPISYGTSSFTSQATLPNYNTFHPLNPPSNIRSINPNDPSQGIVLDLTHNLSEPIRFSSGSSSKMTTEPRFSWMQNNKSSGIAMNNFHNSRTLLDHDRIWKGEESKKPFDDNNMSTIASDPKFRNAVAAAITSLMNKESHTTHPIGASFGHRSGQNGGSSSNNNWVIDSLSKNGKPT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4099 492 Pfam WRKY DNA -binding domain 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g4099 492 Gene3D WRKY domain 219 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g4099 492 ProSiteProfiles WRKY domain profile. 230 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g4099 492 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 486 - -
Lja4g4099 492 MobiDBLite consensus disorder prediction 139 158 - -
Lja4g4099 492 SUPERFAMILY WRKY DNA-binding domain 228 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g4099 492 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 486 IPR044810 GO:0003700
Lja4g4099 492 SMART WRKY_cls 235 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g4099 492 MobiDBLite consensus disorder prediction 461 492 - -
Lja4g4099 492 Coils Coil 65 92 - -
Lja4g4099 492 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4099 Lja-Chr4 74271563 74274842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4099 12 357 WRKY Transcription Factor Family AT1G68150 46.479 6.97e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g4099 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4099 - - gmx:100820209 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4099 4 74271563 74274842 Lja4g4099 4 74271563 74274842 ECH