Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4090 ATGGTTAATTTGTGCAAGTTTGTAGCCATAGATGGTGTGAAGCCAATACTGTTAATGATAGTGGTCCAGGGTATACATGCATTGCTTAGTATTATGATAAAGATGGTAACAAATGATGGAAAAAGCTTAAGTGTTCTTGTTGCCTACCGGTTCCTCTTTTCTGCTACTTTCAATGTTCCTGTTGCTCTCCTCTTTGAAAGGAAAAGCATGCAACACATTACTGGCATAGTTCTATTCCAAGCTTTTCTTTGTGGATTATTTGGGGGATCCTTACAACAAAACCTCTATGCTAAATCTTTGGCCTTGATACCAGCAACATACACAATCACAATGTTAAACCTCATCCCCGTTGTTACCTACATTATGACTGTTTCTCTTAGATTGGAGAAGCCAAATCTTGGAACAAGAGCTGGCAAGGCAAAATTACTGGGAACATTAACTGGAGTTGGTGGTGCTATGATCCTCACTTTATATGAAGGGAGAAGAATATTCAACTGGCCCCTACACATTGATTTATCGAAATATATGTCACCACCACCAGCCAATGGTTCTCGCTTGTGGGGTCTCATCCTAGCTCTGGGAACATCTCTCTGTTTCTCATTGTGGTACATAGTCCAGGCAAAGATGAGTCAGAAGTTTCCGTGGCAGTATTCAGTTGCAGCTTTAACTTCTGTAATGAGCGCAATCCAATCCATTATATATGCTCTTTGCACTGAGAGAGATTGGAGCCAATGGAAAGTTGAATGGAACTTAAGGCTTCTAACCGAAGCTTCCGCGGGTATCTTGGCATCTGGGGTATGTTTTATCCTGTTAGCATATTGCGTGCGCATGAAGGGACCTTTCTTTGTGTCTGCTTTTAGCCCTCTACTGCTTGTGCTTGTGGCCCTGGCCGGTACAATTGTACTAGATGAGTACATTACCATCGGAAGTGTAACAGGGGCTGTGTTGATTGTGTGTGGATTGTACATGTTGTTGTGGGGTAAAAGCAAAGAATCAAAGATGGTAGAAAGTGACGATGTGTCCACAAAAGCTTCTGTTCCATGTGATTCACCTTTGGCTTGCAATCAAAAGGAGCATGATTATGTGTCAACAATTCCTTAG 1101 0.4187 MVNLCKFVAIDGVKPILLMIVVQGIHALLSIMIKMVTNDGKSLSVLVAYRFLFSATFNVPVALLFERKSMQHITGIVLFQAFLCGLFGGSLQQNLYAKSLALIPATYTITMLNLIPVVTYIMTVSLRLEKPNLGTRAGKAKLLGTLTGVGGAMILTLYEGRRIFNWPLHIDLSKYMSPPPANGSRLWGLILALGTSLCFSLWYIVQAKMSQKFPWQYSVAALTSVMSAIQSIIYALCTERDWSQWKVEWNLRLLTEASAGILASGVCFILLAYCVRMKGPFFVSAFSPLLLVLVALAGTIVLDEYITIGSVTGAVLIVCGLYMLLWGKSKESKMVESDDVSTKASVPCDSPLACNQKEHDYVSTIP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4090 366 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Lja4g4090 366 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020|GO:0016021
Lja4g4090 366 PANTHER WAT1-RELATED PROTEIN 13 356 IPR030184 GO:0016021|GO:0022857
Lja4g4090 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 160 - -
Lja4g4090 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Lja4g4090 366 PANTHER WAT1-RELATED PROTEIN 13 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4090 Lja-Chr4 74160834 74165872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4090 13 360 Nodulin-like Gene Family AT1G25270 35.694 2.04e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4090 - - mtr:MTR_4g094360 496.508