Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4079 ATGGCCTCCAATGAAGCTATTGGAATTTCTCCAAACCATGTGGAGAACCATATCTTTACCAATGTTAATGATATTGATTACTTTCAAAGAGCTCAGTGGCTTCGAGCAGCGGTATTGGGAGCGAATGATGGGTTGGTCTCTATTGCCTCACTGATGGTGGGTGTTGGAGCTGTTAAAGAAGATGTGACTGGAGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTCTACACTCAGTATGACATAGAGATAGCTCAGATTCAAAGAGAAAGGGAAACTAATAATAACAATGGAGTTGTTAATATGTATGATGAAGAAGCACAAAGGAAGAAGCTTCCAAACCCATTTCAGGCTGCCCTGGCCTCAGCACTAGCATTTTCTGTGGGTGCTCTGATGCCATTGCTAGCAGCTGTGTTTATAAGGAATTACAAGATCAGGATTGGTGTTGTTGCTGCTGTGGCTAGCTTGACATTGTTGGCATTTGGAGTGGTAGGAGCAGTGCTGGGAAAAACCCTTGTCAGGAGGTCTTGCCTTAGAGTGCTAATTGGTGGTTGGATGGCTATGGCCATAACATTTGGCCTCACCAAATTGATTGGCTCTTCTGGTCTTTCATTTACCAGCTATTTGACCACTAGTGTGATTGCCACAAGCTCTCAATATCATATTCCCATATTTCCTACTTTTCTATCTAACAACTTTTTATCACTTTTGATATTCATCATGGCATCAAACCATGTTGAGATCCCTATCCATGCCAATGTTTTGGAGCCAAAAGAAAGCGAAGGGGTAGAAGAGAGCAACAATAATTATATTGACTACTCTCAGAGGGCTCAGTGGCTCCGAGCGGCGGTTTTGGGAGCAAATGATGGGTTGGTCTCAGTTGCCTCACTGATGATGGGTGTTGGAGCTGTTAAGGAAGATGTGAGTGCCATGCTTCTTGCTGGTTTTGCTGGGTTGGTAGCTGGAGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTCTATACTCAGTATGACATAGAGATAGCTCAAATTAAAAGAGAAAGAGAAACTAATAATAATAATAATAATGAAGAAGCTGAAAGGGAGAAGCTTCCAAACCCATTTCAAGCTGCCCTAGCATCAGCACTGGCTTTTACAGTGGGTGCTCTAGTGCCACTTCTCGCTGCTGTGTTTATAAGGAATCACAAGATCAGGCTTGGTGTTGTTGCTGTTGTGGCTAGCTTGGCCTTGTTGGTATTTGGAGTGGTAGGAGCAGTGCTTGGAAAAACCCCAGTGAAGAGGTCTTGTTTTAGGGTGCTGATTGGAGGTTGGATGGCTATGGCCATAACATTTGGCCTCACAAAATTGATTGGCTCTGCTGGTCTTTGA 1371 0.4376 MASNEAIGISPNHVENHIFTNVNDIDYFQRAQWLRAAVLGANDGLVSIASLMVGVGAVKEDVTGACSMAIGEFVSVYTQYDIEIAQIQRERETNNNNGVVNMYDEEAQRKKLPNPFQAALASALAFSVGALMPLLAAVFIRNYKIRIGVVAAVASLTLLAFGVVGAVLGKTLVRRSCLRVLIGGWMAMAITFGLTKLIGSSGLSFTSYLTTSVIATSSQYHIPIFPTFLSNNFLSLLIFIMASNHVEIPIHANVLEPKESEGVEESNNNYIDYSQRAQWLRAAVLGANDGLVSVASLMMGVGAVKEDVSAMLLAGFAGLVAGACSMAIGEFVSVYTQYDIEIAQIKRERETNNNNNNEEAEREKLPNPFQAALASALAFTVGALVPLLAAVFIRNHKIRLGVVAVVASLALLVFGVVGAVLGKTPVKRSCFRVLIGGWMAMAITFGLTKLIGSAGL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4079 456 Pfam VIT family 362 448 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 Pfam VIT family 34 97 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 Pfam VIT family 280 363 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 Pfam VIT family 108 195 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 16 200 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 241 453 IPR008217 GO:0005384|GO:0030026
Lja4g4079 456 Coils Coil 340 363 - -
Lja4g4079 456 CDD Nodulin-21 278 425 - -
Lja4g4079 456 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 16 200 - -
Lja4g4079 456 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 241 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4079 Lja-Chr4 73961313 73975666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4079 263 456 Nodulin-like Gene Family AT3G43660 67.526 2.10e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4079 K22736 - gmx:100802489 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4079 4 73961313 73975666 Lja4g4079 4 73961313 73975666 ECH