Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4077 ATGTCAGATGTGGACGAGTATCGCTGTTTTATTGGTGGCCTTGCCTGGTCAACATCTGATAGAAAGTTAAAGGATGCATTTGAAAAGTTTGGCAAGCTTACGGAAGCAAAGGTTGTTGTTGACAAGTTCTCTGGACGCTCTCGGGGGTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGACGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGTACTATTACTGTTGATAAAGCTCAGCCACAAGGATCATCTAGGGATAGGGATGATGGTGATCGCTACAGAGAGCGTGGTCGTGATCGTGATGATCGTGGCGATCGTGATCGTAGCCGAGGCTATGGAGGTAGTCGTGGATCTAATGGAGGTGAATGCTTTAAGTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGTCCTAGTGAAGGGGAACGAGGAGGGGGAAGGTATGGTGGCAGGGAAAGTCGAAGCAGTGGCGGTGGCTATGGTCCTGATAGAAATGCAGATCGTTCTTCTGGTGGGCGCAGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAAGTGATCGATACCATCGTGATCGTTCTGGACCGTATGAACGAAGGGGATCATCAGGAGGCTATCGTTGA 636 0.4874 MSDVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDKAQPQGSSRDRDDGDRYRERGRDRDDRGDRDRSRGYGGSRGSNGGECFKCGKPGHFARECPSEGERGGGRYGGRESRSSGGGYGPDRNADRSSGGRSSRDGGSHGDSGSDRYHRDRSGPYERRGSSGGYR* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4077 211 MobiDBLite consensus disorder prediction 184 202 - -
Lja4g4077 211 Pfam Zinc knuckle 127 143 IPR001878 GO:0003676|GO:0008270
Lja4g4077 211 Gene3D - 124 181 - -
Lja4g4077 211 MobiDBLite consensus disorder prediction 76 211 - -
Lja4g4077 211 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Lja4g4077 211 Gene3D - 2 123 IPR012677 -
Lja4g4077 211 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lja4g4077 211 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Lja4g4077 211 PANTHER TRANSFORMER-2-RELATED 1 170 - -
Lja4g4077 211 MobiDBLite consensus disorder prediction 133 153 - -
Lja4g4077 211 MobiDBLite consensus disorder prediction 86 117 - -
Lja4g4077 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lja4g4077 211 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 170 - -
Lja4g4077 211 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Lja4g4077 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lja4g4077 211 SUPERFAMILY Retrovirus zinc finger-like domains 109 147 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4077 Lja-Chr4 73909666 73913226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4077 3 65 C2H2 Transcription Factor Family AT2G19380 41.270 1.73e-10 58.2