Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4072 ATGGGAGAAAATAACAACAATGTCAACAACCTTCCACCCGGGTTCCGATTTTACCCTACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCTTCCCTTTTGCCTTATCACCCAGATGTCATCCCTGATCTTGACCTCTACCCATATGATCCCTGGCAACTTCATGGTAGAGCTTTGGAAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACGCAAAACAGGATCACAAGCAATGGTTATTGGGTAGCAATGGGAATGGAGGAGCCAGTGGTTGCAAGCTCAAGCAACAAGAGAGTTGGTATGAAGAAATATTATGTTTTCCATGTGGGACAAGCCCCTGATGGTAACAAAACCAATTGGATAATGCAAGAGTATCGCCTACCAGATTCTGCTTCCTCTAGCAGAACATCCAGAAGAAAAACAGATCATAGCAAATGGGTGATATGTAGAGTTTATGAGATGGATGATGACCAAGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAGTAAGCTTGCCAAATTAG 567 0.4321 MGENNNNVNNLPPGFRFYPTDEELVVHFLHRKASLLPYHPDVIPDLDLYPYDPWQLHGRALEEGNQWYYYSRRTQNRITSNGYWVAMGMEEPVVASSSNKRVGMKKYYVFHVGQAPDGNKTNWIMQEYRLPDSASSSRTSRRKTDHSKWVICRVYEMDDDQDGDGTELSCLDEVFLSLDDLEEVSLPN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4072 188 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 9 185 - -
Lja4g4072 188 Pfam No apical meristem (NAM) protein 12 130 IPR003441 GO:0003677|GO:0006355
Lja4g4072 188 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Lja4g4072 188 SUPERFAMILY NAC domain 7 155 IPR036093 GO:0003677|GO:0006355
Lja4g4072 188 PANTHER NAC TRANSCRIPTION FACTOR 56 9 185 - -
Lja4g4072 188 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4072 Lja-Chr4 73861672 73863282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4072 10 187 NAC Transcription Factor Family AT1G01720 40.426 1.45e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g4072 NAM 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4072 - - gmx:100813096 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4072 4 73861672 73863282 Lja6g3308 6 61336109 61337686 PCT