Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4068 ATGGAGAATGTGACGAGCAGTAGCAAGATGAAGCTGAGGACCACCGTGAACGAGAACGTTTCGCCGCTGCGGATCGAGTTGGATGACAGAGGAGGACGCTATCTCCAACAAACCACGATGAGTCCACGATTTCAACCGTACAAGGAGAACATCAACGTCGGTTCACCGCTCGCGCGGTTACTCTTCGCCGGATCTCCGATTTCCGGCAGGTTCGCTACCGCCGTCGAAGCCTTCACTCCTCCGACGGCCCTCAGCAAGTACAGGTCCGCAAGAGCGCACCACTACCTCAGCAGCAGCACGGGGAGCAGCAGCTTCGGGTCTCGCGGCGGCAGAACGTCGCTCTCACCGCTTTCTTCTATTGAGAATCTGGACCTCCCGCCGCGCATGTCGCCGCCGATGTACGGCACGCCGGTGAAGGCGGAGGAGGAGGAAGTCCTCGTGATGGATGATATTCCTATGTCTGGTGGAAAAAGCGGCAAGTCTTCATCATCATCTTCCTCCGGCCGGGCTTCTTCGTCGTCATCGTCGGCGCCGTCGGGTAAGAGCGTGATCAAGACGGAGATTTGCAAAGCGTGGGAGGATTCTGGAAACTGCCGCTACAACTCCAAATGCCAGTTTGCGCACGGAAAAGAAGAGCTTCATCCAGTTCGTTCCTCCATGAAGAAGACTAAATCTGAGGCACAGAGGAAGAAGCCAACTACTAGAGCAGGTTCATCAGGATCATGCAACAATGGCCCAAATAACCGCATTGCTCACCAGCTCTATGCGGCACCTGAATATGAACGTGGAGTCACAAGATCCCAACCAGCTTCACCTGAACCTCACCATACCCCTTCCTCTTCCAACAACACTCTCAATGACTGGTCTCCCCTGGATGATGGCATTGAGGTTCTCCTCCCTGGTTCAGATAAAGCTCCATCAAGGGAGGAAGTTGATGCATACATTAACAGTCTTCGCAGCGGCCCAACAACCAAAAAGAGACTATCAGTATTTGCAGCACTTTCCGAAGAGGAGGAGTAA 1020 0.5402 MENVTSSSKMKLRTTVNENVSPLRIELDDRGGRYLQQTTMSPRFQPYKENINVGSPLARLLFAGSPISGRFATAVEAFTPPTALSKYRSARAHHYLSSSTGSSSFGSRGGRTSLSPLSSIENLDLPPRMSPPMYGTPVKAEEEEVLVMDDIPMSGGKSGKSSSSSSSGRASSSSSSAPSGKSVIKTEICKAWEDSGNCRYNSKCQFAHGKEELHPVRSSMKKTKSEAQRKKPTTRAGSSGSCNNGPNNRIAHQLYAAPEYERGVTRSQPASPEPHHTPSSSNNTLNDWSPLDDGIEVLLPGSDKAPSREEVDAYINSLRSGPTTKKRLSVFAALSEEEE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4068 339 MobiDBLite consensus disorder prediction 213 308 - -
Lja4g4068 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 334 IPR045877 GO:0003729
Lja4g4068 339 MobiDBLite consensus disorder prediction 232 250 - -
Lja4g4068 339 MobiDBLite consensus disorder prediction 97 136 - -
Lja4g4068 339 MobiDBLite consensus disorder prediction 156 182 - -
Lja4g4068 339 MobiDBLite consensus disorder prediction 270 289 - -
Lja4g4068 339 MobiDBLite consensus disorder prediction 213 231 - -
Lja4g4068 339 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Lja4g4068 339 MobiDBLite consensus disorder prediction 97 120 - -
Lja4g4068 339 SUPERFAMILY CCCH zinc finger 183 215 IPR036855 GO:0046872
Lja4g4068 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 210 IPR000571 GO:0046872
Lja4g4068 339 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 6 334 - -
Lja4g4068 339 Gene3D - 178 216 - -
Lja4g4068 339 MobiDBLite consensus disorder prediction 151 183 - -
Lja4g4068 339 SMART c3hfinal6 183 210 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4068 181 216 C3H Transcription Factor Family AT1G68200 50.000 1.16e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g4068 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4068 K18753 - lja:Lj6g3v1018460.1 280.026