Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4063 ATGGATGCTCTATCTTTAAGCTCAAACTCAAGCATAAGCATTTCCAAGCCATTTCATTGCCTTCCAAACTCTAGTAAACAGCAAAGAGCTTCTCAGGTGAATTTTGCAATTTCTTGCAGAGGAGCTACAAAGCTAAAGGAAGAAACCACCCATGGAAACCTCTATAAAGTGTTGTCCTTGAAACCCGGAAGTGCTATGGATGAGATAAAGAGAGCATACAGATCAATGGCTCTTCAGTACCACCCTGATGTGTGCCATGATCCTTCCATGAAAGAGGAGTCAACGAAGATGTTTGTTCAGCTAAATGAAGCTTACAAGACACTGTCAAATCCCCTGCTTAGAGCAGAGTATGACAGTGAAATTGAATTGGATTTCAGAAGTGAAACCAATATTGTTAGGGATGAGGGATTGAGAAATATGTGGCAGGAGCTTGTGGTTGATGATTTGAATTTGAAGACAAGGTCTCGCAGACGCATGGGACAGAAAGGGGTATCAGGGAGCAGCAGAATGAGGACAAGAACATGA 525 0.4229 MDALSLSSNSSISISKPFHCLPNSSKQQRASQVNFAISCRGATKLKEETTHGNLYKVLSLKPGSAMDEIKRAYRSMALQYHPDVCHDPSMKEESTKMFVQLNEAYKTLSNPLLRAEYDSEIELDFRSETNIVRDEGLRNMWQELVVDDLNLKTRSRRRMGQKGVSGSSRMRTRT* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4063 174 Gene3D DnaJ domain 41 140 IPR036869 -
Lja4g4063 174 PRINTS DnaJ domain signature 55 73 IPR001623 -
Lja4g4063 174 PRINTS DnaJ domain signature 73 88 IPR001623 -
Lja4g4063 174 PRINTS DnaJ domain signature 93 113 IPR001623 -
Lja4g4063 174 SMART dnaj_3 52 113 IPR001623 -
Lja4g4063 174 ProSiteProfiles dnaJ domain profile. 53 121 IPR001623 -
Lja4g4063 174 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 173 - -
Lja4g4063 174 CDD DnaJ 53 110 IPR001623 -
Lja4g4063 174 Pfam DnaJ domain 53 118 IPR001623 -
Lja4g4063 174 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 3 173 - -
Lja4g4063 174 SUPERFAMILY Chaperone J-domain 41 117 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4063 Lja-Chr4 73778535 73779503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4063 55 119 C2H2 Transcription Factor Family AT1G74250 43.284 6.09e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4063 - - lja:Lj3g3v2385410.1 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4063 4 73778535 73779503 Lja6g3297 6 61249868 61250666 PCT