Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4047 ATGTCTCACTTCGGAAGGTCCGGTCCCCCTGACATCACCGACACCTACTCCCTCCTCGTTCTCAACATCACCTTCCGCACAACTGCTGATGACTTGTTCCCTCTCTTCGATAAGTATGGGAAAGTTGTCGACATCTTCATCCCCAAAGATCGAAGGACTGGGGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTTCAAAGGCTGTTGATAGGCTTGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCTAAGTATGGGCCTAATGCTGAGAGGATTCACAAAGGTAGAATTATTGAATCAGAGGAAAGAGCTAAGCAGGGGTCAAGGAGCCGTAGCCCCAGGAGAAGGCATCGTGATGATCACAGATCCAGCAGAGACAGGGATTACAGGAGGAGAAGCCGCAGCAGAAGTTATGATAAGTATGAACGTGGTGATAGGCACCGTGGGAGAGACAGGGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCAGTCTGGATTACAAAGGTCGTGGAAGGGGGCGTTATGATGATGAGCCTAGTAGAAGCCGGAGCAGATCAGTGGATAGCCGCTCCCCTGCACGCCGCAGTCCTAGTCCTCGAAGAAGTCCTTCCCCTAAGAGGAGTGTTTCCCCTAAAAGGAGCACTTCTCCCCGGAAAAGTCCACGGGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGGTCTCCTACACCTCGCAGTGTCTCACCACGTGGCCGCCCTGTTGCTTCGCGAAGCCCATCCCCTCGAAAGTCAAATGGTGATGAATAA 816 0.5208 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIESEERAKQGSRSRSPRRRHRDDHRSSRDRDYRRRSRSRSYDKYERGDRHRGRDRDYRRRSRSRSASLDYKGRGRGRYDDEPSRSRSRSVDSRSPARRSPSPRRSPSPKRSVSPKRSTSPRKSPRGESPDNRSRDGRSPTPRSVSPRGRPVASRSPSPRKSNGDE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4047 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 271 - -
Lja4g4047 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lja4g4047 271 MobiDBLite consensus disorder prediction 102 117 - -
Lja4g4047 271 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 271 - -
Lja4g4047 271 MobiDBLite consensus disorder prediction 200 225 - -
Lja4g4047 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lja4g4047 271 Gene3D - 4 104 IPR012677 -
Lja4g4047 271 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lja4g4047 271 MobiDBLite consensus disorder prediction 102 271 - -
Lja4g4047 271 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Lja4g4047 271 MobiDBLite consensus disorder prediction 128 199 - -
Lja4g4047 271 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4047 Lja-Chr4 73626180 73629701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4047 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.70e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4047 K12891 - gmx:100778928 337.421