Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4045 ATGCCAATGGATTCCGCTGCGTGCTCCGTCACCACGACGGCGCAGATGGCACTCTTCAGAGCGCTCCACCGCCAATTCACCGGAGCGTCTCATAACCGCGCGCTTCTCCGCCGCAACCTCAAATGCGTTGCTAGTTCTAGCATCAACTGCTTCCGCATTCCGTGCACTTTCACTTCTTCGCCGTTGTCGTCGCCTTCTCTCCGTACCTTCTGCGCGCCGCGCTGCTGCGTTTCGAGCTCTGCGGCTTCGTTTGCTTCCTCTGCCGGTGGTGGAAATGGAGGTTCTGGAGTTGGAGACGGCGGCGGTGGTGGTGGTGGTTCTGGTGGGGAATCCGGTGACGCTAATCTCAAATTGGTTGGAGCTGGAGACGCAGCTCAGGAGCTTTCGGCTCTCTCGCCTGATGTTATTATCCTCGACGTTTCGGGAATGGTGTGCGGAGGATGTGCTGCGACTGTGAAAAGGCTTCTAGAGAGTCGTCCGCAAGTGTCATCGGCCAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAGACTGCACCAAATTGGCAACATCAATTAGGGGAGACACTTGCAGAGCATTTAACTAGCTGTGGTTTCAATTCTAGCATTCGAGATTCAACAAGAGAAAGTTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAACGGCATAGGCAATTAAGAGAAAGTGGTCGCGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTCTGTCTTGTCGGCCATCTCTCCCATTTATTTGCTGCAAAGGCACCATGGGTCCATGCATTTCATTCCATCGGGTTTCACCTGTCCTTGTCTTTGTTTACGTTACTTGGTCCTGGCCGCCAACTTATCTTTGATGGCTTAAAAAGCCTTCTTAAAGGGGCACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTATCATCATTTGCGGTGAGCTCATTTGCTGCCTTGCTGCCAAAATTGGGTTGGAAGGCTTTCTTTGAGGAACCGATCATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAGCCAGTGATATGACAGGACTTCTTAGTCTTTTGCCATCTAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGTCTCCATTGTCGAAGTTCCTTCTGACAGTCTTTCTGTTGAAGACCAAATTATTGTGTTGCCCGGAGACCGGATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGCACCGTAGATGAGTCAAGTTTCACCGGGGAGCCGCTGCCAGTAACAAAAGTAGCTGGGTGTGAAGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACATTGGAAGTGCGGAGACCAGGTGGTGAGACTGCTATGGCAGACATTGTTCGCCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAGCGTTTGGCTGACAAGGTAGCAGGATACTTCACCTATGGAGTGATGGCTGTCTCTGTTACCACATTTACGTTCTGGAGTCTGTTTGGCACACACATTTTACCTGCCACTGCATATCAAGGGAGTGCAGTTTCACTGGCTTTGCAGTTTGCTTGCAGTGTTTTGGTTGTTGCTTGTCCATGCGCACTTGGGTTAGCCACACCTACCGCTGTGCTGGTTGGAACTTCTTTGGGAGCTAAAAGAGGATTACTTTTGCGTGGTGGAAACATTCTAGAGAAATTTGCCATGGTAAACGCTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTAACAAAGGTTGTTGCTTCTACATGCATTGAAAATGCAAACTCAAGCCAAACTATAGAAAATGCTTTGTCTGATGTTGAGATTCTGAGGTTGGCAGCTGCTGTAGAATCAAATTCAGTACATCCCGTTGGGAAAGCAATTGTGGATGCTGCTCAGGCAGTTAACTGTCTTGATGCTAAGGTAGTAGATGGAACATTCCTTGAAGAACCTGGTTCTGGTGCAGTAGCAACCATTGGCAACAGAAAGGTTTATGTTGGGACATTGGAATGGATTACCAGGCACGGAATTAACAACAATATACTTCAAGAAGTGGAGTGTAAAAACGAGTCCTTTGTCTATGTTGGAGTTAATGATACTCTAGCTGGCCTAATTTATTTTGAAGATGAGGTAAGGGAAGATGCAAGGCATGTTGTGGACACGTTGTCTAAGCAAGATATTAGTGTATACATGCTGTCTGGAGATAAAAGGAATGCAGCTGAACATGTTGCATCTCTTGTTGGAATTCCCAAAGACAAGGTGTTATCAGGCGTCAAACCTGATCAAAAGAAGAAGTTCATAAATGAACTCCAGAAAGATAACATTGTCGCCATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTAGCAGCTTCACATATTGGTATTGCATTAGGTGGAGGTGTAGGAGCTGCTAGTGAGGTGTCTTCTATCATATTGATGCGCGACCATCTGTCACAGCTACTTGATGCTTTGGAGCTTAGCAGGCTAACCATGACTACTGTAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATTGCTGCTGGAGTGTTATTTCCTGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTGAGTTCCATTGGCGTAATGACTAACTCTTTGCTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACTTGACATGTTGCCAAAGACTAAGATCCACGTGGATTCTGATCGGACACCCCAAAACCAGAAAATGAAGTATAAATATTAG 2826 0.4614 MPMDSAACSVTTTAQMALFRALHRQFTGASHNRALLRRNLKCVASSSINCFRIPCTFTSSPLSSPSLRTFCAPRCCVSSSAASFASSAGGGNGGSGVGDGGGGGGGSGGESGDANLKLVGAGDAAQELSALSPDVIILDVSGMVCGGCAATVKRLLESRPQVSSASVNLTTETAIVWPVSEAKTAPNWQHQLGETLAEHLTSCGFNSSIRDSTRESFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHLSHLFAAKAPWVHAFHSIGFHLSLSLFTLLGPGRQLIFDGLKSLLKGAPNMNTLVGLGALSSFAVSSFAALLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKAASDMTGLLSLLPSKARLLVNNEETEAVSIVEVPSDSLSVEDQIIVLPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKVAGCEVAAGSINLNGTLTLEVRRPGGETAMADIVRLVEEAQSREAPVQRLADKVAGYFTYGVMAVSVTTFTFWSLFGTHILPATAYQGSAVSLALQFACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNAVVFDKTGTLTVGRPVVTKVVASTCIENANSSQTIENALSDVEILRLAAAVESNSVHPVGKAIVDAAQAVNCLDAKVVDGTFLEEPGSGAVATIGNRKVYVGTLEWITRHGINNNILQEVECKNESFVYVGVNDTLAGLIYFEDEVREDARHVVDTLSKQDISVYMLSGDKRNAAEHVASLVGIPKDKVLSGVKPDQKKKFINELQKDNIVAMVGDGINDAAALAASHIGIALGGGVGAASEVSSIILMRDHLSQLLDALELSRLTMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQILDMLPKTKIHVDSDRTPQNQKMKYKY* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4045 941 MobiDBLite consensus disorder prediction 85 109 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 818 830 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 584 598 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 795 814 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 741 751 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 719 730 - -
Lja4g4045 941 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Lja4g4045 941 ProSiteProfiles Heavy-metal-associated domain profile. 135 209 IPR006121 GO:0046872
Lja4g4045 941 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 286 905 - -
Lja4g4045 941 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 304 904 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja4g4045 941 Gene3D - 354 477 - -
Lja4g4045 941 Gene3D - 595 727 IPR023299 GO:0000166
Lja4g4045 941 PANTHER ATP7, ISOFORM B 82 906 - -
Lja4g4045 941 ProSitePatterns E1-E2 ATPases phosphorylation site. 586 592 IPR018303 -
Lja4g4045 941 SUPERFAMILY Calcium ATPase, transmembrane domain M 335 874 IPR023298 -
Lja4g4045 941 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Lja4g4045 941 CDD P-type_ATPase_Cu-like 237 906 - -
Lja4g4045 941 Gene3D - 135 212 - -
Lja4g4045 941 Pfam haloacid dehalogenase-like hydrolase 580 808 - -
Lja4g4045 941 SUPERFAMILY Calcium ATPase, transduction domain A 387 473 IPR008250 -
Lja4g4045 941 SUPERFAMILY HAD-like 583 902 IPR036412 -
Lja4g4045 941 PRINTS Copper-transporting ATPase signature 337 356 - -
Lja4g4045 941 PRINTS Copper-transporting ATPase signature 289 308 - -
Lja4g4045 941 PRINTS Copper-transporting ATPase signature 868 882 - -
Lja4g4045 941 PRINTS Copper-transporting ATPase signature 496 510 - -
Lja4g4045 941 PRINTS Copper-transporting ATPase signature 773 790 - -
Lja4g4045 941 Pfam Heavy-metal-associated domain 138 205 IPR006121 GO:0046872
Lja4g4045 941 Pfam E1-E2 ATPase 368 564 - -
Lja4g4045 941 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 375 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4045 941 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 632 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4045 941 Gene3D - 575 845 IPR023214 -
Lja4g4045 941 SUPERFAMILY HMA, heavy metal-associated domain 136 182 IPR036163 GO:0046872
Lja4g4045 941 SFLD p-type atpase 567 845 IPR044492 -
Lja4g4045 941 CDD HMA 138 205 IPR006121 GO:0046872
Lja4g4045 941 SFLD C1.7: P-type atpase like 567 845 - -
Lja4g4045 941 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 336 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4045 Lja-Chr4 73596068 73617036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4045 295 927 Primary Pumps ATPases AT1G63440 39.478 7.87e-129 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4045 K17686 - gmx:100796210 1422.91