Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4043 ATGGCGGAGAATGCTTCTTGCAGATTGAATCCTCAGCTAGATTTTCAGAAATTACAATTTGAAGCCCAACATCGCTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAATTATCGGTTGTTTCAAATCACATCCGAACCGCCTAATAGGCCACCAAGTGGTTCACTTTTTCTCTTTGATCGGAAGGTTTTGAGGTACTTTAGAAAGGATGGACACAGTTGGAGGAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGCGCTGCACTGTTACTATGCCCATGGAGAAGAAAGTGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACAAATATTGGTGCAAGTACAGATTCTGATGGCACTAGATCATATTCACATCGGGGAAGGTCTGTATCATCTGGTTTTCCCACAAATTATAGTAGCTTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACTAGCACATTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAACAAGCTCAGGATTACACTTTTTTCGCAAGTCACAAAATATGGAGAATGGTCAGCTGATAGATAAGATTGATGCTCATTCAAATATTTCATATCTTACACATCCCTTTTCAGGTGATCATGGACAATTCGGACAAGATTATATCCCACTTGTTAAGGGGGATAAATCTAGACCGAGTGACAATAATTATATCGAGGGGCAGAGAGCACATGGCATGGCATCCTGGGACAATGTCATGGAGCAATCTGCTGGAATGCATATTGATCCATCTATGGTATCAGTTACTTCCATCCCATCAAGTTCAATGGGAAACATTGTTGAACAAGAACATGCTGCCCTCACTGGAGAGGCAGAGGCTTCTCAATCATTCCAATCGAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAAGTGGAACTTTACCCAATCATTGAGTGTGGAATTTGAACCTGATACTGGTTTACTGGGAAATGAAACTAATAACGCAAGTCCAAGAAATGTTCCTGATCTGTTCAATTTTGATTGTGATCCAAATGAGCAGTCTGTGCAGCAAAGCTTCTCAAAGCAGCATACATATGCTGGAGTTTTTGGTGAAGGATGTATCAGCTATCCCTTGAGCACGAAGCATGCATTACTGGGTGAAGATGAGAGCCTGAAGAAGGTTGATAGCTTCTCTAGGTGGATTATTAAAGAACTTGCAGCAGTGGATGATATGCAAATGCAGTCAAGGAATGCAGATGAATGTGGGAACGTGATAAATGATACCTCATTTGATCTGTCCCGATCTAAAGACCAGCTGTTTAGCATACATGATTTTTCACCTAAGTGGGCTTATCCTGAATCTGAAATTGAGGTCTTCATTATTGGAACATTTTTAACGACTCAACCAGAGGTTGCAACATGCAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTCTTGGCTAATGGAATTCTGTGCTGTCAATCTCCACCTCATGAGACTGGACGGGTCCCTTTTTACATAACATGTTCCGATAGGCTTGCTTGTAGTGAAGTTATGGAATTTGAGTTCAAAGAAGGCTTTTCTGAAAATGTAGAGGTAGATTTTTTCAACAAAATGCAGCTTCATTTGCGACTGGAGGAGTTACTTTCTTTGAAGTCAGTAGAACCTTCAAATGAAGCTTTTGAGGATGATTTTCAGAAAAGAAACTTAATTTATAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCGAGTAAGGAAGAACAAACTGTAGATATGGATATATCAAAACACAAGTTAAAAGCGCATATGACTCAGAGTCTGGTTAAAGAGAAACTGTATTCATGGCTTCTTCGCAAAGTAACCGAAACTGGTAAAGGGCCATCTGTATTAGGTGAGGACGGGCAAGGTGTGTTACATTTAGTAGCTGCTCTTGGTTATCATTGGGCCATAAAACCAATTGTAACTGCTGGGGTTAATATCAACTTCCGCGATGTGAATGGATGGACGGCGCTGCACTGGGCTGCATCCTGTGGCAGAGAGCAAACAGTTGCCGTCCTTGTCTCCATGGGTGCTGCGGCTGGAGCATTGACAGATCCATCTCCAGCATTTCCTTCCGGAAGAACAGCTGCTGATCTTGCTTCCAGCAACAGCCACAAAGGAATTTCTGGTTTTCTAGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCACAGTGGCTGATCCGAATGAAGATTTTCAGAAAGAAACTCCTGGAATGAAAGCAGTGCAGACAGTTTCCGAGCGAATTGCGACACCTGTGCTTCATGGTGAACTACCCGACACTCTCTGCCTTAAGGATTCTCTTGATGCTGTTCGTAATGCTACACAAGCTGCGGATCGTATACATCAGGTATTCAGAATGCAATCATTCCAGAGGAAACAGTTAGCTCAGTATATTGAAGAGTATGAAGATGATGATGAGCTTGGATTGTCTGAGCAGCAAGCTATTTCCCTTCTAGCTTCCGAAACATGCAAATATGGACAAGGAAAGGGGTTGGCCAATGCTGCTGCGCTACAAATACAGAAGAAGTTTCGTGGTTGGACCAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGGATAGTCAAAATCCAGGCCCATGTAAGAGGTCACCAAGCAAGAAAGAAGCACAAACCAGACCTCCTTTGGTCCGTGGGAATCTTGGAGAAGGTGGTATTGCGGTGGAGGCGTAAGGGCCATGGTTTGCGTGGATTTCGACCAGATGCCCCCAATGAGCTCCAGGAACAACCAGGTCCTTCGAATTCAGAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAGAGTGAAGCAAGATTCCAAAAGGCCCTTTCAAGAGTGAAGTCTATGGTTCAGTATCCAGAGGCTCGGGCTCAATACCGGCGTGTGTTAAATATAGTAGAGGACTTTCGTCGAACCCAGCAGGAATCTAATCAGAACTCAATAAATTCGGAAGAGGCAGTTGATGGTTTGGAAGATTTGATTGATATTGACATGCTTCTAGATGATGATAATTTCATACCTTTAGCATTCGATTGA 3186 0.4234 MAENASCRLNPQLDFQKLQFEAQHRWLRPAEICEILRNYRLFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEESENFQRRSYWMLEQDMMHIVFVHYLDVKVNKTNIGASTDSDGTRSYSHRGRSVSSGFPTNYSSLPSGSTDSMSPTSTLTSLCEDADSEDIHQTSSGLHFFRKSQNMENGQLIDKIDAHSNISYLTHPFSGDHGQFGQDYIPLVKGDKSRPSDNNYIEGQRAHGMASWDNVMEQSAGMHIDPSMVSVTSIPSSSMGNIVEQEHAALTGEAEASQSFQSNWQIPFEDNTGELPKWNFTQSLSVEFEPDTGLLGNETNNASPRNVPDLFNFDCDPNEQSVQQSFSKQHTYAGVFGEGCISYPLSTKHALLGEDESLKKVDSFSRWIIKELAAVDDMQMQSRNADECGNVINDTSFDLSRSKDQLFSIHDFSPKWAYPESEIEVFIIGTFLTTQPEVATCNWSCMFGEVEVPAEVLANGILCCQSPPHETGRVPFYITCSDRLACSEVMEFEFKEGFSENVEVDFFNKMQLHLRLEELLSLKSVEPSNEAFEDDFQKRNLIYKLISLKEEEEYSSKEEQTVDMDISKHKLKAHMTQSLVKEKLYSWLLRKVTETGKGPSVLGEDGQGVLHLVAALGYHWAIKPIVTAGVNINFRDVNGWTALHWAASCGREQTVAVLVSMGAAAGALTDPSPAFPSGRTAADLASSNSHKGISGFLAESLLTSHLESLTVADPNEDFQKETPGMKAVQTVSERIATPVLHGELPDTLCLKDSLDAVRNATQAADRIHQVFRMQSFQRKQLAQYIEEYEDDDELGLSEQQAISLLASETCKYGQGKGLANAAALQIQKKFRGWTKRKEFLFIRQRIVKIQAHVRGHQARKKHKPDLLWSVGILEKVVLRWRRKGHGLRGFRPDAPNELQEQPGPSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNIVEDFRRTQQESNQNSINSEEAVDGLEDLIDIDMLLDDDNFIPLAFD* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4043 1061 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 2 1061 - -
Lja4g4043 1061 MobiDBLite consensus disorder prediction 952 975 - -
Lja4g4043 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 883 926 IPR027417 -
Lja4g4043 1061 MobiDBLite consensus disorder prediction 144 187 - -
Lja4g4043 1061 SMART ANK_2a 701 730 IPR002110 GO:0005515
Lja4g4043 1061 SMART ANK_2a 668 697 IPR002110 GO:0005515
Lja4g4043 1061 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lja4g4043 1061 SUPERFAMILY Ankyrin repeat 650 761 IPR036770 -
Lja4g4043 1061 Pfam IQ calmodulin-binding motif 884 902 IPR000048 GO:0005515
Lja4g4043 1061 Pfam IQ calmodulin-binding motif 907 926 IPR000048 GO:0005515
Lja4g4043 1061 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lja4g4043 1061 Gene3D - 882 927 - -
Lja4g4043 1061 ProSiteProfiles IQ motif profile. 882 911 IPR000048 GO:0005515
Lja4g4043 1061 Pfam Ankyrin repeats (3 copies) 673 761 IPR002110 GO:0005515
Lja4g4043 1061 SUPERFAMILY E set domains 472 557 IPR014756 -
Lja4g4043 1061 Gene3D - 636 763 IPR036770 -
Lja4g4043 1061 ProSiteProfiles IQ motif profile. 905 929 IPR000048 GO:0005515
Lja4g4043 1061 ProSiteProfiles Ankyrin repeat region circular profile. 701 726 - -
Lja4g4043 1061 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Lja4g4043 1061 SMART iq_5 904 926 IPR000048 GO:0005515
Lja4g4043 1061 SMART iq_5 881 903 IPR000048 GO:0005515
Lja4g4043 1061 Pfam IPT/TIG domain 472 551 IPR002909 -
Lja4g4043 1061 Gene3D Immunoglobulins 465 560 IPR013783 -
Lja4g4043 1061 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 1061 - -
Lja4g4043 1061 SMART CG_1_2 18 136 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4043 Lja-Chr4 73566096 73575879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4043 1 1038 CAMTA Transcription Factor Family AT5G64220 50.556 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja4g4043 CG-1 8.7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4043 K21596 - gmx:100795682 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4043 4 73566096 73575879 Lja6g3279 6 61100242 61109358 PCT