Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4035 ATGGAAAACGACGACGTCGATATGGTCGGAGCTGAAAACAACAACAACAACGAAGCTGAATTGGATGACATGAAGAAACGCTTGAAGGAAATGGAAGATGAAGCTGCAGCTTTGCGGGAGATGCAGGCCAAGGTTGAGAAGGAGATGGGATCTGTGCCAGATCCTGCCAATGCTTCTGCAAGTCAGACCAATAGAGAGGAAGTGGATTCTCGATCAGTCTTTGTTGGCAATGTGGATTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACTGTAAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAGCCTAAGGGTTATGCCTATGTAGAATTTCTTGAAGTAGAGGCTGTCCAAGAGGCTCTCGCGCTGAATGAGTCTGAACTACATGGGCGTCAATTGAAGGTAAGTGGTAAGAGGACCAACGTACCAGGGATGAAGCAATTTCGTCCCCGCGCCCCTAACCCTTACATGGGTTTTCGAGGCAGAGCCCTATTTGCACCACCTCCTTTTGCCTTTGCTCCTTATGGATATGGAAAGGTTCCAAGATTCAGAATGGGGATGCGCTACAGCCCCTACTATTGA 603 0.4793 MENDDVDMVGAENNNNNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALFAPPPFAFAPYGYGKVPRFRMGMRYSPYY* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4035 200 Gene3D - 8 143 IPR012677 -
Lja4g4035 200 SUPERFAMILY RNA-binding domain, RBD 59 169 IPR035979 GO:0003676
Lja4g4035 200 SMART rrm1_1 72 143 IPR000504 GO:0003723
Lja4g4035 200 MobiDBLite consensus disorder prediction 46 70 - -
Lja4g4035 200 CDD RRM_II_PABPs 72 143 - -
Lja4g4035 200 MobiDBLite consensus disorder prediction 55 70 - -
Lja4g4035 200 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g4035 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Lja4g4035 200 Coils Coil 14 48 - -
Lja4g4035 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 12 197 - -
Lja4g4035 200 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 12 197 - -
Lja4g4035 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4035 Lja-Chr4 73481907 73486963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4035 72 199 Eukaryotic Initiation Factors Gene Family AT2G36660 25.581 4.73e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4035 K14396 - mnt:21400190 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4035 4 73481907 73486963 Lja4g4035 4 73481907 73486963 ECH