Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4033 ATGGCTTCCCTTATTCCACATGGTCCTATTGATCATGAATTTAGACCGAACTCAGCAATACCACAGAAAACTCTCCAAGACATTGAAGCCAATACTACTATACTGGAGATAGAAGCATCATCCAATATTAATGCTTCGAAAATGATCAATGGAGGAGGAGAAGCTTCAGGTTGGAATCAGAAGAAAGAGATGGGTATGTGCTTGACTTGGAAGGATCTATGGGTGAGTGCCTCCATGGGAAAGCATGGAAGCAAACCAATTCTTCAGGGTTTAACTGGTTTTGCCAAGCTAGGTCAGCTCTTGGCCATAATGGGTCCTTCTGGTTGTGGGAAATCTACACTTCTCGATGCTCTGGCAGGGAGATTAAGTTCAAACACAAAACAAACAGGGGAGATTCTGATCAATGGTAACAAACAAGCACTGGCTTATGGAACTTCGGCATATGTGACACAAGATGATACCTTAATGACAACCTTAACAGTAAAAGAAGCAGTGCATTATTCAGCTCAACTTCAATTGCCTGATTCCATGTCCAAGGCAGAGAAGAAAGAGAGAGCAGAGTTTACAATCAGAGAAATGGGTCTGCAAGATGCCATTAACACACGAATTGGAGGTTGGGGAATTAAAGGAATTAGTGGCGGTCAGAAAAGGCGCGTTAGTATCTGCATAGAGATTCTAACTCGCCCTAAACTTCTATTTCTTGATGAACCAACTAGTGGATTGGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATTTCCACATTGGATAAAAAAGATAGCATTCAGAGGACTATTATTGCCTCAATTCATCAGCCTAGTTCAGAAGTTTTTCAACTCTTCCACAACCTTTGTCTTCTATCTTCAGGCAAAATAGTTTATTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTCGCTTTAAATGGTTTTCCATGTCCTACTCTCCAGAATCCATCAGATCATTTACTAAAGACTATAAACAAGGATTTTGAACAGGATGTTGAGGTTGGTTTAGAAGGGACTGGAACTATACCCACAGAAGAAGCCATTCGTATCCTTGTGAACTCATATAAGTCATCAGATAGGAACCAAGATGTTCAAAGTGAAGTATCAGTATTATCTGAAAAGGACAAAAGTTCAGCATACAACAAGAGAAGGCATGCTAGCTTCCTTAATCAATGCATAGTTCTTACAAGAAGATCGTCAGTTAACATGTACCGTGATCTAGGCTATTACTGGTTACGCCTTGGCATCTATATTGCCTTGGCTATAAGTGTAGCCACTCTCTTCATAAATCTGGATAAAAGTAATGGCTCAATTCAGGATAGAGGTTCACTTCTTATGTTTATTTCTTCATTCTTTACTTTCATGACCATTGGTGGATTCCCTTCCTATGTGGAGGACATGAAGGTATTTGAACGTGAAAGGCTAAATGGGCATTATGGTGTTACTGCATATGTAATTGGCAACACTTTTTCATCCATCCCATACTTGTTGCTGGTTTCAATAATTCCTGGAGCTATAGCTTACTACCCTCCTGGTCTCCAGAATGGATATGACCACTTTCTATATTTCCTTGCTGTTCTGTTTTCTTGTCTAATGTTAGTTGAGAGCCTTATGATGATAGTTGGTAGCATTGTCCCAAACTTTCTAATGGGTATCATAACTGGTGCTGGAATTCAAGGAATCATGATGTTGGGTGGAGGGTTCTTCAAATTGCCAAATGATCTTCCAAACCCATTTTGGAGATACCCTTTGTTCTATGTTGCATTTCATAGATATGCCTTCCAAGGAATGTTCAAAAACGAGTTTGAAGGACTTAAATTTGCTAGAAATGAAGAAGTTGGTGCTGGTGCCTCATCATCAAATTACATTAGTGGTGAAGAGATTCTGAGAAGTAGATGGCAAGTGGACTTGAGTTACTCAAAATGGGTTGATCTTGGAATTTTGCTGGCCATGATTGTTCTGTATAGAGTGTTGTTTTTGGTGATCATCAAAACTACTGAGAAGCTGAAACCAATTGTTCTATCATTCAAATCGGTTTCTCCCAAGAAAACAATGCAGATCATCGAGAATCCTAATGCCACTCCTTTGAAAGATGAGTGTTAG 2109 0.3959 MASLIPHGPIDHEFRPNSAIPQKTLQDIEANTTILEIEASSNINASKMINGGGEASGWNQKKEMGMCLTWKDLWVSASMGKHGSKPILQGLTGFAKLGQLLAIMGPSGCGKSTLLDALAGRLSSNTKQTGEILINGNKQALAYGTSAYVTQDDTLMTTLTVKEAVHYSAQLQLPDSMSKAEKKERAEFTIREMGLQDAINTRIGGWGIKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRISTLDKKDSIQRTIIASIHQPSSEVFQLFHNLCLLSSGKIVYFGPASAASEFFALNGFPCPTLQNPSDHLLKTINKDFEQDVEVGLEGTGTIPTEEAIRILVNSYKSSDRNQDVQSEVSVLSEKDKSSAYNKRRHASFLNQCIVLTRRSSVNMYRDLGYYWLRLGIYIALAISVATLFINLDKSNGSIQDRGSLLMFISSFFTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTFSSIPYLLLVSIIPGAIAYYPPGLQNGYDHFLYFLAVLFSCLMLVESLMMIVGSIVPNFLMGIITGAGIQGIMMLGGGFFKLPNDLPNPFWRYPLFYVAFHRYAFQGMFKNEFEGLKFARNEEVGAGASSSNYISGEEILRSRWQVDLSYSKWVDLGILLAMIVLYRVLFLVIIKTTEKLKPIVLSFKSVSPKKTMQIIENPNATPLKDEC* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4033 702 Gene3D - 68 306 IPR027417 -
Lja4g4033 702 Pfam ABC-2 type transporter 393 604 IPR013525 GO:0016020|GO:0140359
Lja4g4033 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 305 IPR027417 -
Lja4g4033 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 314 IPR003439 GO:0005524
Lja4g4033 702 SMART AAA_5 97 286 IPR003593 -
Lja4g4033 702 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524
Lja4g4033 702 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 19 698 - -
Lja4g4033 702 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 698 - -
Lja4g4033 702 Pfam ABC transporter 95 239 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4033 Lja-Chr4 73449291 73454707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4033 84 299 Calmodulin-binding Proteins AT2G36910 29.333 4.36e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4033 4 73449291 73454707 Lja4g4033 4 73449291 73454707 ECH