Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4032 ATGGCTTCCCTTATTCCACCTGCTCCTATTGATTATGAAATTAAACCGTGTCCAACATCAATACTCCAGCAAACTGTCCTAGATATTGAAGCCCCATGGAAGGATAATGAGAAGAAAGAGAAGGGAATCTGCTTGACTTGGAAGGATCTATGGGTGAGTGCCTCCATGGTAAAGCATGGAAGCAAACCAATTCTTCAGGGTCTAACTGGCTATGCCAAGCCAGGCCAGCTCTTGGCTATCATGGGACCCTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGTAGATTAAGCTCCAAAACAAAACAAACAGGGGAGATTCTGGTCAATGGTAACAAACAAGCTCTGGCTTATGGAACCTCGGCATATGTGACACAAGATGATACCTTAATGACAACCTTAACAGTTAGAGAAGCAGTTCATTATTCAGCTAAACTTCAGTTGCCTGATACCCTTTCCAAGGAAGAGAAGAAAGAGAGAGCAGAGTTCACAATCAGAGAAATGGGTCTCCAAGATGTCGTCAACACAAGAATTGGAGGTTGGGGAATTAAAGGCATTAGCGGCGGTCAGAAAAGGCGAGTGAGCATTTGCATAGAGATCCTAACTCGCCCTAAACTTCTGTTTCTGGATGAACCAACTAGTGGATTGGATAGTGCAGCTTCCTACTATGTCATGAAAAGAATTTCCACACTGGATAAAAAAGATGGCATTCAGAGGACTATTATTGCCTCAATTCATCAGCCTAGTTCTGAAGTTTTTCAACTCTTCCATAACCTTTTCCTTCTATCTTTTGGGAGTACAGTTTATTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTCGCGTCAAATGGTTTTCCTTGTCCTACCCTTCAGAATCCATCTGATCATTTACTTAAAACTATAAACAAAGATTTTGAGCAGGATATTGAGGTGGGTTTTGCTGGGACTAGAACAATACCCACAGAAGAAGCAATCCATATCCTTCTGAGCTCATATAAATCATCCAAATGGAACCATGAAGTTCAAAATGAAGTAGCAATACTATCTGAAAAGGACACCAATCCAACAAACAAGAGGAGAAAGCATGCTGACTTCCTTAATCAATGCTTAGTTCTTACCAAAAGATCATCTGTCAATATGTTTCGCGATCTAGGTTATTACTGGTTACGCCTTGCCGTATATATTGCATTGGCTACAAGTTTAGCCACTGTCTTCTATGATCTTGGTACAACATATGGTTCAATTAAGGATAGAATTTCACTCCTTATGTTTGTGTCTACATTCATAACTATGATGACCATTGGTGGATTCCCTTCCTATGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTAAATGGGCATTATGGTGTCACTGCATATGTTATTGGGAACACTTTTTCATCCATCCCATACTTGTTGCTGGTTACAATTATTCCTGGAGTTATTACTTATTACCCTCCTGGTCTTCAGAAAGGATATGTGCACTTTTTGTATTTTCTCTGTGTTCTGTTTTCTTGTCTAATGATAGTAGAGAGCCTTATGATGGTAGTTGCAAGTATTGTTCCAAACTTTCTAATGGGTATCATAACTGGTGTTGGAATTCAAGGAATCATGATATTGGGGGGAGGATTCTTCAAATTGCCAAATGATCTTCCAAAGCCATTTTGGAGATATCCATTGCACTATGTTGCCTTCCATAGGTATGCATACCAAGGAATGTTCAAAAACGAGTTTGAAGGACTAAAGTTTGCTACAAATAATGAAGTATGTGGGGGTGGCTCATCATCAAATTACATTAGTGGTGAAGAGATTCTGAGAAATGAATGGCAAGTCGACTTGAGTCACTCAAAATGGGTTGATCTTGGAATCTTGTTGGCCATGATCGTTCTGTCTCGAGTGCTATTTTTGGTGATAGTCAAAACCACTAAGAAGGTAAAACCCATTGTTGCATCATTCTTATCAGCCCCTCCCAAGAAATCGATTCAGATCATGGAGAACCCAAATGTCACTCCGTTGAATTTGTAG 2034 0.4007 MASLIPPAPIDYEIKPCPTSILQQTVLDIEAPWKDNEKKEKGICLTWKDLWVSASMVKHGSKPILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLSSKTKQTGEILVNGNKQALAYGTSAYVTQDDTLMTTLTVREAVHYSAKLQLPDTLSKEEKKERAEFTIREMGLQDVVNTRIGGWGIKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRISTLDKKDGIQRTIIASIHQPSSEVFQLFHNLFLLSFGSTVYFGPASAASEFFASNGFPCPTLQNPSDHLLKTINKDFEQDIEVGFAGTRTIPTEEAIHILLSSYKSSKWNHEVQNEVAILSEKDTNPTNKRRKHADFLNQCLVLTKRSSVNMFRDLGYYWLRLAVYIALATSLATVFYDLGTTYGSIKDRISLLMFVSTFITMMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTFSSIPYLLLVTIIPGVITYYPPGLQKGYVHFLYFLCVLFSCLMIVESLMMVVASIVPNFLMGIITGVGIQGIMILGGGFFKLPNDLPKPFWRYPLHYVAFHRYAYQGMFKNEFEGLKFATNNEVCGGGSSSNYISGEEILRNEWQVDLSHSKWVDLGILLAMIVLSRVLFLVIVKTTKKVKPIVASFLSAPPKKSIQIMENPNVTPLNL* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4032 677 Pfam ABC-2 type transporter 370 581 IPR013525 GO:0016020|GO:0140359
Lja4g4032 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 291 IPR003439 GO:0005524
Lja4g4032 677 Pfam ABC-2 type transporter 248 349 IPR043926 GO:0140359
Lja4g4032 677 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524
Lja4g4032 677 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 22 675 - -
Lja4g4032 677 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 22 675 - -
Lja4g4032 677 SMART AAA_5 74 276 IPR003593 -
Lja4g4032 677 Pfam ABC transporter 66 216 IPR003439 GO:0005524
Lja4g4032 677 Gene3D - 32 284 IPR027417 -
Lja4g4032 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4032 Lja-Chr4 73438021 73443856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4032 75 262 Calmodulin-binding Proteins AT2G36910 28.436 1.01e-08 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4032 4 73438021 73443856 Lja4g4032 4 73438021 73443856 ECH