Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4029 ATGAGTTCTCTTCTTCAACCTCATGCTAGTGATGGTGAAACAAACAATGGCTCTAAAATTCTACCAACCACTGTGGAATTTGAGACCACATTCGAGGTGGAAGCCATTAAATCAGTAGAAACTGGTGAGGCAGATAAAGAGGAGGGTGTTTTCTTGACATGGGAGGACCTGTGGGTGACTGTTTCAAATGGAAAGAATGTAAGGAAACCAATACTTCAGGGTCTAAATGGCTATGCCAAACCAGGGCAACTCTTGGCTATAATGGGTCCTTCAGGTTGTGGCAAGTCCACCCTTCTGGATGCTTTAGCAGGAAGGTTAAGTTCAAGGACAAAGCAAACAGGGAGGATCCTAATCAATGGCCACAAACAAGCACTAGCTTATGGAACATCTGCATATGTAACAGAAGATGATACCATTTTGACAACACTAACAGTTGGAGAAGCAGTGTACTACTCAGCTCACCTCCAATTACCAGATTCCATGTCGAAGTCGGAGAAACGAGAGAGAGCAGATTTCACAATCAAGGAAATGGGTCTGCAAGATGCCATTAACACCAGAATTGGAGGATGGGGATCCAAAGGAGTCAGTGGTGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCCAGGCTTCTCTTCCTTGATGAACCCACTAGTGGACTTGATAGTGCTGCTTCTTATCATGTCATAAGTAGAATATCCAGCTTAAACAAAAAGGATGGCATTCAAAGGACTATTGTTGCATCAATCCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCATAGCCTTTGTCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTGCCTCTGCAGCAAATAAGTTTTTCTCATCAAATGGTTTTCCCTGCCCCAGTCTCCAGAGTCCTTCTGATCACTTTGTAAAAACAATTAACAAGGATTTTGAACAGGATCTTGAGAAAGGATTAGGTGGAGGGTTAAGCCCAGAAGAAGCTATTCATATTCTTGTTAAATCATATGATTCATCTGAAATTAGTGAAGTTCAAAAAGAAATAGATCAAATTAAAAAAAGAGACTCAGGCATAATGGAAAAGACAAGCCATGCTGATTTTTTGACTCAGTGTCTCATTCTTACAAGAAGATCTTTCCTGAATATGTATCGCGAAGTAGGCTATTACTGGTTACGCCTACTAATCTATGGTGCCATGGCTTTAAGTCTTGGTACTATGTTCTTTGACATTGGTTCAAGCAATGAATCAATTGAGGCCAGAGCTTCACTGCTTGTGTTTGTTGTGACATTCCTGACCTTCATCACTGTTGCTGGGTTCCCTTCTTTTGTGGAGGATATGAAGGTATTCGAAAGAGAAAGGCTTAACGGGCATTATGGTGTCATTGCATTTACCATTGGCAACACATTATCTTCTGTTCCATTCTTGCTGTTGATGTCACTGATCCCAGGAGCAATTGTTTATTACCTAGTTGGACTTCACCAAGGACATGAACAATTTGTGTACTTCATTTCTGTGCTTTTCACTTCTGTCTTGCTCGTTGAGGGTCTCATGATGATTGTAGCAAGTTTGGTAATTCCCAATTTCCTGATGGGAATAATCTTTGGTTCTGGAATCTTGGGCATGATGATGTTAGATGGTGGGTTTTATAGGCTACCAAGTGATATTCCAAAGCCCTTTTGGAGATACCCTTTGCACTACATTTCCTTCAACAAGTATGCCTACCAAGGATTGTTCAAGAATGAGTTTCATGGCCTAACATTCCCAAGCAATCAAGTTGAAGGACCTGTGACAATTAGTGGTGAAGATATCCTGAGACACTTGTGGCAAGTGGAAGTGAATTATTCAAAGTGGGTGGATGTTGCTATCTTGGTAGGAATGGCAGTAACTTATAGAATTCTGTTTTTGGCTATCATCAAGAGCTTTGAGAAAGTGAAGCCTATTGTCACAGCAATTAATTGTCCCCAAGCACACTTCAGGTTCACCAAAGTGAGTAAGAGCACTGAGATTGATTAG 2022 0.409 MSSLLQPHASDGETNNGSKILPTTVEFETTFEVEAIKSVETGEADKEEGVFLTWEDLWVTVSNGKNVRKPILQGLNGYAKPGQLLAIMGPSGCGKSTLLDALAGRLSSRTKQTGRILINGHKQALAYGTSAYVTEDDTILTTLTVGEAVYYSAHLQLPDSMSKSEKRERADFTIKEMGLQDAINTRIGGWGSKGVSGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVISRISSLNKKDGIQRTIVASIHQPSNEIFQLFHSLCLLSSGKTVYFGPASAANKFFSSNGFPCPSLQSPSDHFVKTINKDFEQDLEKGLGGGLSPEEAIHILVKSYDSSEISEVQKEIDQIKKRDSGIMEKTSHADFLTQCLILTRRSFLNMYREVGYYWLRLLIYGAMALSLGTMFFDIGSSNESIEARASLLVFVVTFLTFITVAGFPSFVEDMKVFERERLNGHYGVIAFTIGNTLSSVPFLLLMSLIPGAIVYYLVGLHQGHEQFVYFISVLFTSVLLVEGLMMIVASLVIPNFLMGIIFGSGILGMMMLDGGFYRLPSDIPKPFWRYPLHYISFNKYAYQGLFKNEFHGLTFPSNQVEGPVTISGEDILRHLWQVEVNYSKWVDVAILVGMAVTYRILFLAIIKSFEKVKPIVTAINCPQAHFRFTKVSKSTEID* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4029 673 Pfam ABC-2 type transporter 372 585 IPR013525 GO:0016020|GO:0140359
Lja4g4029 673 Pfam ABC-2 type transporter 255 311 IPR043926 GO:0140359
Lja4g4029 673 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 298 IPR003439 GO:0005524
Lja4g4029 673 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Lja4g4029 673 Gene3D - 52 318 IPR027417 -
Lja4g4029 673 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 5 670 - -
Lja4g4029 673 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g4029 673 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Lja4g4029 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 287 IPR027417 -
Lja4g4029 673 SMART AAA_5 81 270 IPR003593 -
Lja4g4029 673 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 5 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4029 Lja-Chr4 73318684 73322475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4029 71 233 Calmodulin-binding Proteins AT2G36910 28.571 3.34e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4029 K05681 - gmx:100789571 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4029 4 73318684 73322475 Lja4g4029 4 73318684 73322475 ECH