Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4028 ATGAACTGTCGAAAGGACAAGAGCAACTATCGTTGTTTAAATCGCTATTTATTTTCGTCATTTGATGCCCTTAAGGCAAAAGAAACCAATGGGAGTGTTCAGGGAGAGGAGGAGGGCATCACAATAACATGGGAGGACTTGTGGGTCACTGTTCCAAATGGAAAGGAAAGGAAACCAATTCTCCAGGGTCTTACAGGTTATGCTCAGCCAGGAAGGCTTCTGGCTGTAATGGGCCCTTCAGGCTGTGGAAAATCCACTCTTCTTGATGCTTTAGCAGGAAGAGTGAGTTTAAACATAAAACAAACTGGAAATATTCTAATCAATGGCCACAGACAATCACTTGCTTATGGAATATCAGGCTATGTAACACAAGAGGATGCTCTGCTATCAACTTTAACAGCTAAGGAAACTTTGTACTACTCAGCCCAGCTCCAATTTCCAGATTCCATGTCCATAGCAGATAAGAAAGAACAAGCAGATATCATACTCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGGGTTGGAGGTTGGGGTTATAAAGGCCTAAGTGGGGGACAAAAGAGGAGACTTAGCATTTGCATTGAGATTCTAACACGCCCTAGATTACTCTTCCTAGATGAACCAAATAGTGGACTTGACAGTGCAGCTTCTTATTATGTTATGAGTAGAATTGCAAGACTGAATCTAAGGGATGGCATTAGAAGGACCATTGTGGCATCCATCCACCAGCCTAGCAGTGAAGTTTTTGAACTTTTCCATGACCTTTGTCTTCTGTCTTATGGTGAAACAGTGTATTTTGGTCCAGCTTCTGATGCAAACCAGTTTTTTTCTTCAAATGGTTTTCCTTGTCCATCTCTCCACAACCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGATGCTGAAGAAGGCTTTGGTAAGGGAGTAACTACAGAAGAAGCAATTGATATCCTTATAAAGTCTTATGGATCATCTCAAATTGGAAACCAAGTTATAAAGGAAGTGGCAAAAATAAGTGCAAGTGACTCTGGTGCAATAGGGAAGAAGAGGATCCATGCTGCATTCCTCACTCAATGCCTTATTCTTATAAGAAGATCTTCCTTGCAATTTTTTCGCGACATAAGCAATTACTGGTTACGCTTAGGTGGCTTCATTGTGATAGCCATAGGCATTGGTTCTATCTTCTATGACATTGGCTTTAGTATTGAATCTATTCAGGCAAGAGGTTCGCTGCTCACATTTTTAATTTCAGTTCTGACTTTCATGACCCTTGTTGGTGGATTCTCTCCACTTTTGGAGGAAATGAAGGTATTCGAACGAGAGAGATTGAATGGACACTATGGCGTTTCGGCTCATCTTATTGGCAACACACTCTCTGCTATTCCTTACATGCTAATTATCTCACTGATCCCAGGTGGAATAGCTCACTACCTTTGTGGGCTGCACAAAGGACTAGAACACTTTCTGTACTTCACTTCCTTGCTATTCGGCACCATGTTGTGGGTTGAGAGTCTTATGCTAGTTGTTGGGAGCATCTCCCCCAACTATGTAATGGGCATGTTCATTGCTGGTGGAATTGAAGGACTCATGATTCTACTAGGTGGATTTTATAGATTACCAAATGAACTTCCCAAACCATTGTGGAAATACCCTTTATACTATCTTTCCTTTCTCAAGTATGCATTTCAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTTCTTTAGGCCAAGATGGAGGCAATAAAACATTAAGTGGAAGAGAAGTGCTGGTTGAGACATGGCATGTGGAAATGGATCACTCTAAGTGGGTTGATCTAGCTATCATGTTTGGGATGATTGTTCTGTATCGGATTCTGTTCTTGGCTATCACTAAGAGCAAGGAGAACCTGAAGCCTTTTGTTGCAGCCATTCGTGGTAGAAGAGCATGA 1953 0.4112 MNCRKDKSNYRCLNRYLFSSFDALKAKETNGSVQGEEEGITITWEDLWVTVPNGKERKPILQGLTGYAQPGRLLAVMGPSGCGKSTLLDALAGRVSLNIKQTGNILINGHRQSLAYGISGYVTQEDALLSTLTAKETLYYSAQLQFPDSMSIADKKEQADIILREMGLQDAINTRVGGWGYKGLSGGQKRRLSICIEILTRPRLLFLDEPNSGLDSAASYYVMSRIARLNLRDGIRRTIVASIHQPSSEVFELFHDLCLLSYGETVYFGPASDANQFFSSNGFPCPSLHNPSDHYLRIINKDFEQDAEEGFGKGVTTEEAIDILIKSYGSSQIGNQVIKEVAKISASDSGAIGKKRIHAAFLTQCLILIRRSSLQFFRDISNYWLRLGGFIVIAIGIGSIFYDIGFSIESIQARGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVSAHLIGNTLSAIPYMLIISLIPGGIAHYLCGLHKGLEHFLYFTSLLFGTMLWVESLMLVVGSISPNYVMGMFIAGGIEGLMILLGGFYRLPNELPKPLWKYPLYYLSFLKYAFQGSFKNEFEGLTFSLGQDGGNKTLSGREVLVETWHVEMDHSKWVDLAIMFGMIVLYRILFLAITKSKENLKPFVAAIRGRRA* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4028 650 SMART AAA_5 70 259 IPR003593 -
Lja4g4028 650 Pfam ABC-2 type transporter 363 576 IPR013525 GO:0016020|GO:0140359
Lja4g4028 650 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 287 IPR003439 GO:0005524
Lja4g4028 650 Pfam ABC transporter 62 211 IPR003439 GO:0005524
Lja4g4028 650 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524
Lja4g4028 650 Gene3D - 40 296 IPR027417 -
Lja4g4028 650 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 22 641 - -
Lja4g4028 650 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 22 641 - -
Lja4g4028 650 Pfam ABC-2 type transporter 244 307 IPR043926 GO:0140359
Lja4g4028 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 279 IPR027417 -
Lja4g4028 650 CDD ABCG_EPDR 39 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4028 Lja-Chr4 73310467 73314979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4028 71 229 Calmodulin-binding Proteins AT2G36910 32.738 2.51e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4028 4 73310467 73314979 Lja4g4028 4 73310467 73314979 ECH