Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4020 ATGGGACTTCATCACAGAAGGCTGTTGTCACCTAACGACAACTGTGAACTCATCTGCAATGAGGAAGAAAAGTCTTGTTCATCAAACTGCCAAGATTGCATCAAAAACTGCCTTGAACTTTCATCTTCTCTGAGTCAAACCAAGCACAAAACCTCCACCTACTTGATCATCGGTTTCTCAATCGTGGCTGCAGTTTTCTTCGCCATGTGCTGCTATGCTATCTACGTCAAGTTCATCTCCCCATGGAACAGGAGGAGGAGGAGGAGAAGAACAACAACCTTAGCACTGCAACAAACAGAGGAATCTTTCACCGACGAGGAACATGGTCCTGTGGTTGACCAGGATCACCATATCTGGTTCATACGCACCACCGGTCTGCAACAATCGATTATCAGTGCAATCACGGTTTGTGAGTACAAGAAAGGTGAGGGGTTGGTTGAAGGAACTGATTGCTCTGTTTGCTTGAGCGAGTTTGAAGAAGGTGAGAATCTCAGGCTTTTGCCTAAGTGTAACCATGCTTTTCATTTGATTTGTATTGATACTTGGCTGAGATCGCATACCAATTGCCCCATGTGTCGTGCTCCGATTGTTGCAAATCCTGCTATGGTTTCATCTATGGAGGTTGATATTTTGGGTGAGAATTCTGTGGAAAGTGGTGTTCATGGGGGAGAGAACAGTGGTGGTGGTGGTGGTGGTGGTGAGAGGTTGAGGAATGTTGGAAATGAGGAAGAAGAAGAAGGGGAAGGTGGTGGAGATGGGAGGAGGAGGAGGAGCAGGGTATGTGAAAGTGGGAGGTTAGGTTCTGAGCTGGTGAATGTGCTGCCTAGGAGATCAGTGTCTCTTGATTCTGCTTCTGCTGCTAAGATCAATCTTGCTCTTACTAATGTTTTATCAGTGCAATCTCGTGGGAATTCAAAGAGGGTTTCTGGGAATGGGAATTCTTCTTCTTCTAGGGGAAGTAATCTGCAGCAGAGTGCGCCTTGTTCGATGAAGAGGTCGCGATCCTACAATGGTAAGCATCTGCTATCCTGGTATAGCCGCAGCCAGAAAAAGCCAAATGCTCCTCCAAGAAGCTTTTGA 1080 0.4639 MGLHHRRLLSPNDNCELICNEEEKSCSSNCQDCIKNCLELSSSLSQTKHKTSTYLIIGFSIVAAVFFAMCCYAIYVKFISPWNRRRRRRRTTTLALQQTEESFTDEEHGPVVDQDHHIWFIRTTGLQQSIISAITVCEYKKGEGLVEGTDCSVCLSEFEEGENLRLLPKCNHAFHLICIDTWLRSHTNCPMCRAPIVANPAMVSSMEVDILGENSVESGVHGGENSGGGGGGGERLRNVGNEEEEEGEGGGDGRRRRSRVCESGRLGSELVNVLPRRSVSLDSASAAKINLALTNVLSVQSRGNSKRVSGNGNSSSSRGSNLQQSAPCSMKRSRSYNGKHLLSWYSRSQKKPNAPPRSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4020 359 SUPERFAMILY RING/U-box 145 199 - -
Lja4g4020 359 Pfam Ring finger domain 150 193 IPR001841 -
Lja4g4020 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 200 IPR013083 -
Lja4g4020 359 MobiDBLite consensus disorder prediction 300 332 - -
Lja4g4020 359 PANTHER RING-H2 FINGER PROTEIN ATL54 13 347 - -
Lja4g4020 359 SMART ring_2 151 192 IPR001841 -
Lja4g4020 359 MobiDBLite consensus disorder prediction 340 359 - -
Lja4g4020 359 MobiDBLite consensus disorder prediction 300 334 - -
Lja4g4020 359 CDD RING-H2_PA-TM-RING 150 193 - -
Lja4g4020 359 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 347 IPR044675 -
Lja4g4020 359 MobiDBLite consensus disorder prediction 237 259 - -
Lja4g4020 359 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Lja4g4020 359 MobiDBLite consensus disorder prediction 216 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4020 Lja-Chr4 73228958 73230657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4020 59 248 C3H Transcription Factor Family AT1G72220 46.073 1.35e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4020 - - mtr:MTR_4g093830 337.035