Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4009 ATGACTAGAAAGAGGATACAGATAAAGAAAATAGACAACATAAGTTCGAGGCAAGTGACATTCTCAAAGAGGAGAAAAGGGCTTTTCAAGAAAGCTCAGGAGCTCTCAACTCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAACAAGCTCTTTGAGTATGCTAGTTCAAGCATTCAAAAAGTAATTGAAAGGCGTAGTCAGTGTTCAGGGATTCACAGATTGGAGCACCTACCTATTGAGCAGTTTATGCAGTTTGAGAGTGACTCCAATGACACACTGCGCAAGAAAGTAGAAGAAAAGACACATGAACTGAGGCAGTTGAACGGGGAAGATCTGCAAGGATTGACATTACATCAGCTTCAGAAACTAGAGGAAGTACTTAAAAGAAGTTTAGCCAGTGTTTCCAGAGTGAAGGATGAAAAATTTATGCAAGAAATCAGCACCCTTAAGAGAAAGGAAGTGGAACTGATTGAAGAAAACCAAAAATTGAAACAGGTACCAAGCCTTACACAGTATGGACAAAGGCAATCATTAGAGTCCACTATTAGCTCTTCATCTTATCTTCTTGAAGAAGATGGTAGTGACACGTCTCTCAAGTTGGGGTTGCCTTTATTACAATAA 633 0.3949 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATNKLFEYASSSIQKVIERRSQCSGIHRLEHLPIEQFMQFESDSNDTLRKKVEEKTHELRQLNGEDLQGLTLHQLQKLEEVLKRSLASVSRVKDEKFMQEISTLKRKEVELIEENQKLKQVPSLTQYGQRQSLESTISSSSYLLEEDGSDTSLKLGLPLLQ* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4009 210 Pfam K-box region 93 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g4009 210 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lja4g4009 210 Coils Coil 150 170 - -
Lja4g4009 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 - -
Lja4g4009 210 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lja4g4009 210 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Lja4g4009 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g4009 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 PANTHER - 1 192 - -
Lja4g4009 210 Coils Coil 124 144 - -
Lja4g4009 210 Coils Coil 94 114 - -
Lja4g4009 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g4009 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4009 Lja-Chr4 73148794 73158902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4009 1 207 MADS-box Gene Family AT4G24540 47.489 8.59e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g4009 K-box 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4009 - - aprc:113860188 293.123