Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3997 ATGGACATGGTGCTGAATCCGTGTCAAAACAGGGAAGGTTCGCTGATGATGGCGGCGGCGGCTCCCATGCAGGTTGATGGGGTCCACTTTGCCAATGGAGCTGATGAAGGGCAACATGCTCCGGCCACCGTTGCTGCTTCTGCATCCAATGCTTCTGCTCCCCACCCTCGCGCCGGTGAACTCACCATTTCATTTGAAGGCGAGGTTTATGTTTTCCCGGCGGTTACGCCAGAAAAGGTGCAGGCTGTACTATTACTCTTGGGCCAGAAGGACATACCCAATAGCACCCCCAACTCTGGCCTTTTACAACAGAAAAACTTTCCGCAAATTAAGGGAATAAATGATCCTTCCCAAAGTTCAAACCTCTCGCGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCATTGAAGGAAGATTACAAATCTCCGGCTGGAAACTTGGATTCTAGCAATGGTACTCCTCCTTGCCCAGAATCTATTGAACGAAGATGCCAGCATTGTGGAACTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAAGACTCCTTATGAACAAAATGAACGGGATACTTCAGCTGATATGAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCCGACCAGGCTGAAGAGGGAACCCCTGAGGAAAATAAGCCAGTGCCAATGGATTCCAGAGAGACACCTGAGAAGAAAAATGAACAGGATATACTTGGAACTGCGCAAACAGTCACTGACAACTTGTCCATCCAATTGGAGAATCATGCCCTTAGTCTGGACGAGCAGGATATTGAGGATCTAGCTGATGCTTCTGGGACTGAATTTGGGATTCCTGCAGGTTTTGATGATCAGATTGATATTGATGTTTCCAACATGAGGACTTACTGGCTGTGA 1071 0.4706 MDMVLNPCQNREGSLMMAAAAPMQVDGVHFANGADEGQHAPATVAASASNASAPHPRAGELTISFEGEVYVFPAVTPEKVQAVLLLLGQKDIPNSTPNSGLLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAGNLDSSNGTPPCPESIERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAKTPYEQNERDTSADMKPSTTEPENSCADQAEEGTPEENKPVPMDSRETPEKKNEQDILGTAQTVTDNLSIQLENHALSLDEQDIEDLADASGTEFGIPAGFDDQIDIDVSNMRTYWL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3997 356 MobiDBLite consensus disorder prediction 164 192 - -
Lja4g3997 356 SMART GATA_3 189 242 IPR000679 GO:0006355|GO:0043565
Lja4g3997 356 MobiDBLite consensus disorder prediction 238 294 - -
Lja4g3997 356 ProSiteProfiles Tify domain profile. 54 89 IPR010399 -
Lja4g3997 356 MobiDBLite consensus disorder prediction 271 293 - -
Lja4g3997 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 245 - -
Lja4g3997 356 MobiDBLite consensus disorder prediction 240 255 - -
Lja4g3997 356 CDD ZnF_GATA 194 237 IPR000679 GO:0006355|GO:0043565
Lja4g3997 356 SMART tify_2 54 89 IPR010399 -
Lja4g3997 356 Pfam GATA zinc finger 195 231 IPR000679 GO:0006355|GO:0043565
Lja4g3997 356 Gene3D - 189 251 IPR013088 GO:0006355|GO:0008270
Lja4g3997 356 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
Lja4g3997 356 Pfam tify domain 56 88 IPR010399 -
Lja4g3997 356 ProSitePatterns GATA-type zinc finger domain. 195 222 IPR000679 GO:0006355|GO:0043565
Lja4g3997 356 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 22 347 - -
Lja4g3997 356 PANTHER GATA TRANSCRIPTION FACTOR 28 22 347 IPR045280 GO:0006355
Lja4g3997 356 Pfam CCT motif 125 166 IPR010402 GO:0005515
Lja4g3997 356 ProSiteProfiles GATA-type zinc finger domain profile. 189 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3997 Lja-Chr4 73080308 73086205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3997 60 247 Tify Gene Family AT1G51600 54.271 9.46e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja4g3997 CCT 8.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3997 - - gmx:102669848 501.516