Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3993 ATGGCTACTCTATGGTTTCTCAATTTGGCTCTCAAATGCATTCACCATTTTGCATGGCCTCTTCTTGCTCTGGGGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCAACAAGGAAATGAGGAATTTGATCTCATATTGGATACTTCTCTCATTGTTATACCTGTTTGAGTATGCTTTTATGAGACTTCTCCAATGGTTTCAGTGCTGGCCTTACATGAAGCTAATGATCATCTTCTGGCTCATCATACCCGACTTCGGACGAGCTTCAAACGTGTATAATAACCTTATTTGCTCATGGATCTCCATGAAACCACAAACAGACATATGCAGATGGAGGAAGTTTTTTGTCAAGAAAGAAAACTTTTTACTGCAAGAAGAGAAATATATAAAAGATAATGGAACTGAAGCCTTGGAGAAATTCAATGCTAGCAAGGACACAACAGATAAACCTGATGCAGAAGCAACAAATGCGATTAGAGTTACTTGTAATAAAGAAATGCAACAGAAAAATGAAAAAATGCTCCAAACAGAGCACAAAGACATTAAAGATTTGGAGGTCATTGAGAAAAAAGAAATTCCTGCTGGCAAGCAAGATATTCCTTCCTCACCTAACCTTGCAGCAAGCCATAATGCTTCATCAACCATGGTGGAAAATAAAGGAATAGGAGTGAAAGGCAGCGCCAGTGAAGAGTTTTCTCAGAGTTCAACACATAAGGAAGTGCAAAAAGAGTGGACTTGCGCTTTGTGTCAGATAAAAGCTTCGAGCGAGAAAAACTTGAAATCCCACTTACATGGGAAGAAACACTGGGAAACTTATCAAGCTTTAAGAGCAAAGACTCGACCTGAACAGAAACAGAAGAACATCATTACCAATTATCAGCTAAGTTACAAGACCAATAAGGGAGAGAGTATTGTTAACACTGGTTTGAAGGGAAACGAAGTCATGGATCATAATAAGGTGAAAGAAATGCAAAAGATCCTGTCTCAATATGCTAAGGTGAAATATTCCAATTTTAGGTGTGAAGTCTGTAATGTCTGCTGCACTAGTAAGGGTGACCTGGCCTCTCACTTAAATGGGAGGAAGCACTTGGAAAATATTATGGGGGTAGATGAGCTTAGAGGTAGTTGA 1140 0.3921 MATLWFLNLALKCIHHFAWPLLALGYPMCASVQAIETDSNKEMRNLISYWILLSLLYLFEYAFMRLLQWFQCWPYMKLMIIFWLIIPDFGRASNVYNNLICSWISMKPQTDICRWRKFFVKKENFLLQEEKYIKDNGTEALEKFNASKDTTDKPDAEATNAIRVTCNKEMQQKNEKMLQTEHKDIKDLEVIEKKEIPAGKQDIPSSPNLAASHNASSTMVENKGIGVKGSASEEFSQSSTHKEVQKEWTCALCQIKASSEKNLKSHLHGKKHWETYQALRAKTRPEQKQKNIITNYQLSYKTNKGESIVNTGLKGNEVMDHNKVKEMQKILSQYAKVKYSNFRCEVCNVCCTSKGDLASHLNGRKHLENIMGVDELRGS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3993 379 PANTHER HVA22-LIKE PROTEINS 1 288 IPR004345 -
Lja4g3993 379 SUPERFAMILY beta-beta-alpha zinc fingers 238 284 IPR036236 -
Lja4g3993 379 ProSitePatterns Zinc finger C2H2 type domain signature. 344 366 IPR013087 -
Lja4g3993 379 SUPERFAMILY beta-beta-alpha zinc fingers 330 370 IPR036236 -
Lja4g3993 379 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Lja4g3993 379 Gene3D Classic Zinc Finger 319 371 - -
Lja4g3993 379 Gene3D Classic Zinc Finger 229 277 - -
Lja4g3993 379 SMART ZnF_U1_5 245 279 IPR003604 GO:0003676|GO:0008270
Lja4g3993 379 SMART ZnF_U1_5 339 373 IPR003604 GO:0003676|GO:0008270
Lja4g3993 379 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 288 - -
Lja4g3993 379 SMART c2h2final6 248 272 IPR013087 -
Lja4g3993 379 SMART c2h2final6 342 366 IPR013087 -
Lja4g3993 379 Pfam Zinc-finger of C2H2 type 248 272 - -
Lja4g3993 379 Pfam Zinc-finger of C2H2 type 342 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3993 Lja-Chr4 73046703 73049331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3993 248 370 C2H2 Transcription Factor Family AT2G19380 30.894 2.06e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g3993 TB2_DP1_HVA22 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3993 - - lja:Lj4g3v0386210.2 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3993 4 73046703 73049331 Lja4g3993 4 73046703 73049331 ECH