Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3990 ATGGCTTCTCTGTGGTTTCTCAAATTAGCTCTCAATTGCATTGACCATTTCGCATGGCCACTTCTTGCTTTGGGGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGACTCCAATAAGGAAATGAGAGATTTGATCTCATATTGGATACTTCTCTCATTGTTATACCTATTTGAGTATGCTTTTATGAAACTTCTCCAATGGTTCGAGTTCTGGCCTTACATGAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTCGGACGAGCTTCATATGTCTATAGTAACCTTATTCGCGCATACATCTCCACAAAACCACAAACAGCCATATACAGGTTAAATAAATGGAGGAAGTTTTTTGTCAAGAAAGAAAACTTTTCACTGCTAGCAGAGAAATATGTGAAAAAGAATGGAACTGAAGCATTTGAGAAACTCATAACTAGCAAGGACACAATAGATAATCCTGATGTAGAAGCAACGAATGCAATTAGAGCTACTTGTAAAGAAATGAAACAGACAAATGGAAAAATGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTCATCGAGAAAAAAGAAATTCCGGCAGGCAAGCAAGATATTCCTTCCACACCTAACCTTGCTCCAAGTCAGAATGCTTCATCAACCATGGTGGAATCTAAAGGAATAGCAGTGAAAGTTAAAGCTGGTGAAGAGTTTCCTCAGAGTTCTATACATAAGGAAGTGCAGAAAGAGTGGACTTGCGCTTTATGTCAGGTATCAGCTTCGAGCGAGAAAAACTTGAATTTCCACCTACATGGGAAGAAACACAGGGCTGCTCATGAAGCTCTAAAAGCAAAAAGCTCTAAAGCAAAAACTCAACCTGTTCCTCAGAAGCTGAAATTACCATCTGGCAGTGGACAAGGAAAGGCTAAATCCAGAACAGAACGGAAACAGAAGAACATCATTACCAATCAGCTAAGTAACAAGACCAATAAGGGAGAGAGTATTGTTAACATTAGTTTGAAGGGAAATGCAGTCATGGATCATAATAAGGGGCAAGAAATGCAAAAGATCATGTCTGAATATGTTAGAGTGAAGTATTCCAATTTAAGGTGTGAATTTTGTAATGTTCGTTGCACTAGTGAGGGTGACATGGCCTCTCACTTAAATGGGAGGAAGCACTTGGCAAATATTATGGGGGTAGATGAGTTTAGAGGTAGTTGA 1218 0.3941 MASLWFLKLALNCIDHFAWPLLALGYPMCASVQAIETDSNKEMRDLISYWILLSLLYLFEYAFMKLLQWFEFWPYMKLMIIFWLIIPDFGRASYVYSNLIRAYISTKPQTAIYRLNKWRKFFVKKENFSLLAEKYVKKNGTEAFEKLITSKDTIDNPDVEATNAIRATCKEMKQTNGKMLQTEHKDIKDLEVIEKKEIPAGKQDIPSTPNLAPSQNASSTMVESKGIAVKVKAGEEFPQSSIHKEVQKEWTCALCQVSASSEKNLNFHLHGKKHRAAHEALKAKSSKAKTQPVPQKLKLPSGSGQGKAKSRTERKQKNIITNQLSNKTNKGESIVNISLKGNAVMDHNKGQEMQKIMSEYVRVKYSNLRCEFCNVRCTSEGDMASHLNGRKHLANIMGVDEFRGS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3990 405 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 307 395 - -
Lja4g3990 405 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 302 - -
Lja4g3990 405 SMART ZnF_U1_5 365 399 IPR003604 GO:0003676|GO:0008270
Lja4g3990 405 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Lja4g3990 405 MobiDBLite consensus disorder prediction 276 317 - -
Lja4g3990 405 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Lja4g3990 405 SMART c2h2final6 250 274 IPR013087 -
Lja4g3990 405 SMART c2h2final6 368 392 IPR013087 -
Lja4g3990 405 Pfam Zinc-finger of C2H2 type 369 392 - -
Lja4g3990 405 Pfam Zinc-finger of C2H2 type 250 274 - -
Lja4g3990 405 Gene3D Classic Zinc Finger 336 397 - -
Lja4g3990 405 Gene3D Classic Zinc Finger 229 279 - -
Lja4g3990 405 PANTHER HVA22-LIKE PROTEINS 1 302 IPR004345 -
Lja4g3990 405 PANTHER HVA22-LIKE PROTEINS 307 395 IPR004345 -
Lja4g3990 405 SUPERFAMILY beta-beta-alpha zinc fingers 236 284 IPR036236 -
Lja4g3990 405 SUPERFAMILY beta-beta-alpha zinc fingers 354 396 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3990 Lja-Chr4 72974437 72990933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3990 249 396 C2H2 Transcription Factor Family AT5G61190 29.870 3.58e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3990 - - lja:Lj4g3v0387230.3 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3990 4 72974437 72990933 Lja4g3990 4 72974437 72990933 ECH