Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3988 ATGTTGCAGTTCTCTGTTCAACGAGTGAGGAAATTGAGCATTCTGAGGCCTCAGATCTTTGCTTTGGGAAGTTCCCATTTGTCAACAGCAGCTCAACCATCTTCCAGTAAGGGTAATCCCCCGAGGGTTCCGAATCTTATTGGGGGAAGGTTTCTTGACTCAAAGTCTTCAACTTTCATCGATGTTATAAACCCAGCAACCCAGGAAGTTGTTTCAAAACTTCCATTGACTACAGATGAAGAGTTTAAAGCTGCTGTATCTGCAGCAAAGAAAGCATTTCCATCATGGCGTAACACTCCTATTACGACACGCCAACGTGTTATGTTGAAGCTCCAGGAGCTCATTCGCAGAGATATGGACAAACTTGCCCTCAATATCACCACCGAACAAGGAAAGACTTTGAAGGATGCCCAAGGAGATGTATTTCGTGGCTTAGAGGTGGTGGAACATGCTTGTGGGATGGGAACTCTCCAAATGGGGGAGTATGTTTCCAATGTATCACATGGCATTGATACATACAGCATTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCGTTGTGGATGTTCCCTATTGCAGTTACGTGTGGTAATACATTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTATTGCTTGCAGAATTGGCATTGGAGGCTGGATTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACTCATGATGTTGTGAATGCTATTTGTGACGATGACGACATCAAGGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCCAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTGTTAATGCTTTAGTTGCTGCTGGTTTTGGTGCAGCAGGACAAAGATGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCGCAGAACAATGGGAAACTAAACTTATTGAGGGTGCCAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCAGATCTTGGCCCAGTCATCAGCAGACAGGCAAAGGAGCGAATTCACAGACTAATTCAATCCGGGGTTGAAAGTGGTGCCAAAGTACTGCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTGTTGGCCCAACCATCTTGTCAAATATCACTGCCAACATGGAGTGCTACAAGGAAGAAATTTTTGGCCCTGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAGACATTATCAACAAGAACCAGTACGGAAATGGTGCTTCTATATTTACTACATCTGGTGTTGCTGCAAGGAAGTTTCAGACTGATATTGAGGCTGGGCAGATTGGCATCAATGTTCCAATTCCAGTTCCTTTGCCCTTTTTCTCATTCACTGGAAACAAGGCATCGTTTGCTGGCGATCTCAATTTCTATGGCAAAGCAGGGGTTAACTTTTATACACAGATGAAAACAATAACCCAGAAATGGAAGGATTCAGAGGGTGGTAGCAAGATTAACTTGGCCATGCCAACCTCTCAAAAGTCTTGA 1617 0.4348 MLQFSVQRVRKLSILRPQIFALGSSHLSTAAQPSSSKGNPPRVPNLIGGRFLDSKSSTFIDVINPATQEVVSKLPLTTDEEFKAAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNITTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASVLLAELALEAGLPEGVLNIVHGTHDVVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALVAAGFGAAGQRCMALSTVVFVGGAEQWETKLIEGAKALKVNAGTEPDADLGPVISRQAKERIHRLIQSGVESGAKVLLDGRNIVVPGYESGNFVGPTILSNITANMECYKEEIFGPVLLFMEADSLEEAIDIINKNQYGNGASIFTTSGVAARKFQTDIEAGQIGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQMKTITQKWKDSEGGSKINLAMPTSQKS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3988 538 SUPERFAMILY ALDH-like 40 520 IPR016161 GO:0016491
Lja4g3988 538 Pfam Aldehyde dehydrogenase family 52 515 IPR015590 GO:0016491
Lja4g3988 538 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 24 538 - -
Lja4g3988 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 24 538 IPR010061 GO:0004491
Lja4g3988 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Lja4g3988 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Lja4g3988 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Lja4g3988 538 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Lja4g3988 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3988 Lja-Chr4 72952869 72959393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3988 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 82.114 0.0 840