Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3984 ATGGCTGATTGTTATTGGCATTTTAGTTTCCATCCACAAACTCTTGTGTTCTTTTATGCAATAAGGACCATTTTGTTCCTCCTGATTTTCCCTCTTGCAATTGCTCAGGATGTCTCTTTTGACTACCCTGGCTTCAGTAATGATGATTTAAAGCAGCTCAAGCTTGAAGGAGATGCTTCTATTTCAGATTCTGCCATTCACCTCACTACTGGGAGAGTCACAATTACCCAACCTATTCATCTTTGGAACAAGACCTCAAATGAACTAAAAGACTTCACCGCCCACTTTTCTTTTGTTGTTTTCTCAGACCAGGGTTATTATGGAGATGGCTTCACATTCTTCCTTGCAGGCCAAGGTGTTTCAGAGGCAGGAATAGAAGGAGGAGGAGGCATTTGCATCGGTCGCGTCGATTACCAAACAATTCTCCAAACCGAGTATCAATTTGTTGCGGTGGAGTTTGACACTTATTCAAACGTTTGGGACCCGAGAGGCATACATGTTGGTGTGAATGTTAACTCTATGCAATCTGACATACTTGAGCAATGGTGGACCGAAATTTATGTGTGGAATGTTTATGACTGCAGCATTCAATACAATGCCGCAGATAACTTTCTTAATGTTTCTTTCACTGGATATAGATTAAATGAAGGGAGAGTAACACAATACCTCACACACCACATTGATTTGAGGGATCACTTACCAGATTATGTTCTCGTTGGTGTATCAGCTGCAACAGGTAATTTTTCTGAGCAACATACCTTGCTGTCATGGTCATTTAGTACAAGCCTACCTAGTAATGCTGTTGATACTAAGAAGAAAACAAAGTTGTTGGAGGGAATAGGAATTGGTGCAGGTTTTTCTGTGAGTGTAATTGTGTTGGTCTATGTTTTCTTATGGAGGAAGAGTAAAGGAAAAGAAGAAGAGTTTGCTTCTGAAGCCTCTTCTGATTTGAACATGGATGACGAATTCCAAATGAACACTGGACCAAAGAAGATCTGGTATGACGAGCTGGTATCTGCAACAAACAACTTTGAAGAGAAGCAGAAGCTTGGGCAAGGGGCGTTTGGCTGTGTTTATAAAGGCTTTTTGAAAGACTCAAACACCTATGTTGCTATAAAGAGGATATCAGCGAAATCAACACAGGGTGTGAAGGAGTACATAGCAGAAGTGAAGATCATCAGCCAATTGAGGCACAAGAACTTGGTGAAACTCACTGGTTGGTGCCACAAGAGAAAGGATCTTCTCCTAATATATGAGTACATGCCAAATGGTAGCTTAGATTCTCGTCTTTTCGACGAACAAAGCTTCTTGTCATGGGAGGTGAGACACAACATAGCTCTGGGTTTGGCCTCAGCATTGCTATATCTGCAGGAAGAATGGGAAAAATGTGTGATTCATAGGGACATTAAATCAAGCAACATAATGTTGGATTCCAATTTCAATGCTAAGCTTGGGGATTTTGGCCTGGCCTTGCTGGTAGATCATGAGAAAGGGTCACAAACCACAGTTTTGGCTGGGACAATGGGTTACCTTGCCCCTGAATACATGAAAACAGGCAAGGCTAGAAAGGAATCAGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGATAGCAAGTGGTAGAAAAGCCATTCACAACCAAAACAAGGAGGGTCTAGTGCCATTAGTTGAGTGGGTGTGGGAACTTTATGGATTTGGAGATCTCCTTGAAGCAGCAGACCCAAAGCTTTGTGGGGTGTTTAATGTGCATCAAATGTTTGGCTTACTAGTTGTTGGTCTTTGGTGTGCAAATCCAGATTGCTCATCAAGACCCTCTATGAGGCAAGTGATCAAGGTGCTTAACCTTGAAGCTCCTTTACCAATTCTTCCACAACAGATCCCTGAGACAGTACTCAATCTCCCTCCAGCAACAGATGAGTTGTTTTTCACAGTTTCATCCTTCTAG 1944 0.4187 MADCYWHFSFHPQTLVFFYAIRTILFLLIFPLAIAQDVSFDYPGFSNDDLKQLKLEGDASISDSAIHLTTGRVTITQPIHLWNKTSNELKDFTAHFSFVVFSDQGYYGDGFTFFLAGQGVSEAGIEGGGGICIGRVDYQTILQTEYQFVAVEFDTYSNVWDPRGIHVGVNVNSMQSDILEQWWTEIYVWNVYDCSIQYNAADNFLNVSFTGYRLNEGRVTQYLTHHIDLRDHLPDYVLVGVSAATGNFSEQHTLLSWSFSTSLPSNAVDTKKKTKLLEGIGIGAGFSVSVIVLVYVFLWRKSKGKEEEFASEASSDLNMDDEFQMNTGPKKIWYDELVSATNNFEEKQKLGQGAFGCVYKGFLKDSNTYVAIKRISAKSTQGVKEYIAEVKIISQLRHKNLVKLTGWCHKRKDLLLIYEYMPNGSLDSRLFDEQSFLSWEVRHNIALGLASALLYLQEEWEKCVIHRDIKSSNIMLDSNFNAKLGDFGLALLVDHEKGSQTTVLAGTMGYLAPEYMKTGKARKESDIFSFGVVLLEIASGRKAIHNQNKEGLVPLVEWVWELYGFGDLLEAADPKLCGVFNVHQMFGLLVVGLWCANPDCSSRPSMRQVIKVLNLEAPLPILPQQIPETVLNLPPATDELFFTVSSF* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3984 647 PANTHER LECTIN RECEPTOR KINASE 30 647 - -
Lja4g3984 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 276 IPR013320 -
Lja4g3984 647 SUPERFAMILY Protein kinase-like (PK-like) 319 613 IPR011009 -
Lja4g3984 647 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Lja4g3984 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lja4g3984 647 PANTHER - 30 647 - -
Lja4g3984 647 CDD STKc_IRAK 350 614 - -
Lja4g3984 647 Pfam Legume lectin domain 38 273 IPR001220 GO:0030246
Lja4g3984 647 ProSiteProfiles Protein kinase domain profile. 344 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3984 647 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Lja4g3984 647 Pfam Protein kinase domain 344 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3984 647 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Lja4g3984 647 Gene3D - 35 279 - -
Lja4g3984 647 CDD lectin_legume_LecRK_Arcelin_ConA 38 263 IPR001220 GO:0030246
Lja4g3984 647 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3984 647 Gene3D Transferase(Phosphotransferase) domain 1 421 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3984 Lja-Chr4 72924325 72926268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3984 24 627 Receptor kinase-like Gene Family AT5G10530 44.000 1.20e-168 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja4g3984 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3984 - - cam:101492002 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3984 4 72924325 72926268 Lja4g3984 4 72924325 72926268 ECH