Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3983 ATGAGCTCCGAAATGCTTGTGGAATGGTGGACAGATATTCCAAATGGGAGACTTTATAATTGCAGTATTGAGTACAGTTCTAGAAGCAATGATTTCAAGGTTTTTTTCACTGGATATATATCCAATGGTGATCCTGTGACACAGTACCTGTCATACCAAGTTGATACCAAACAGGCCTTACCAGAGATGGTTGTTGTTGGGATATCAGCAGCAACAGGAGGACATTCTGAGAAGCACACCCTGCTGTCATGGTCATTTAGAACAAGCCTACCAAGTACTGTTGCTGATTTTGAGAAGGGAAGAGACTTAATCAAGTCAAAACTGTTAGAGGGAATAGGAATTGGTGTTGTTGTGCCTTTGGTTTTATTAGGTTTGGTTCATATTTTATTATGGATGATGAATATAGGAAAGGAAGAAAAAGAAGAAGAAGCCACTTCAGAAACCGCTTCTGATCAGAACATGGATGATGAATTCCAAAAGAGTTCTGGGCCTAAGAAGATTTGTTATTATGAATTGTTAACTGCAACAAACAACTTTGAAGAGACACAGAAGCTTGGGCAGGGTGGTTTTGGTGGTGTTTACAAGGGCTATTTTAGAAACTCAAACTCATATGCTGCTGTAAAGAGGATATCAGCAAATTCAAAACAAGGCCTAAAGCAATACACAGCAGAAGTGAAGATCATTAGCCAACTGAGGCACAGGAATTTGGTGAAACTTGCTGGTTGGTGCCACAAAAAGACTGATCTCCTCCTAATATATGAGTACATGCCAAATGGAAGCTTAGATTCTCATATTTTTCGTGGGAAAAGCATCTTGTCATGGCAGGTGAGGTACAGCAACATAGCTCAGGGATTGGCCTCAGCATTGCTTTATTTGCAGGAAGAATGCGGAAAATGTGTGCTTCACAGGGACATCAAATCAAGCAACATAATGTTGGACTCAGACTTCAATGCTAAGCTTGGAGATTTTGGCCTAGCTAGGTTTGTGGATTCTGAGAAAGGATCACAAACCACTGTTGTAGCTGGTACCATGGGTTACCTAGCCCCTGAGTATATGCACACTGGCAAGGCCAGAAAGGAATCGGACATATTCAGTTTTGGAGTTGTTTTGTTGGAGATAGCCACTGGAAGAAAGGCCATTGACTACCAAGACATGGAGGTTCAGGAAACAATTGTTGAATGGGTTTGGCAACTATATGGATTGGGAAATATCCTTGCAGCAGCAGACCCAAAGCTATGTGGGGTGTTTGATGTGCAGCAAATGGAGTGTTTGCTGGTTTTTGGCCTCTGGTGTGCTAATCCAGATTGCAGATCCAGACCCTCCATAAGGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTACCTGTTCTCTCACAATCGGTACCTGCGCTAATGTATCTCCCATGGACAACAAATGAGTTGTTTTTTACAGTTTCATCTTCCTTAAAGGCTACATGTTGA 1464 0.4167 MSSEMLVEWWTDIPNGRLYNCSIEYSSRSNDFKVFFTGYISNGDPVTQYLSYQVDTKQALPEMVVVGISAATGGHSEKHTLLSWSFRTSLPSTVADFEKGRDLIKSKLLEGIGIGVVVPLVLLGLVHILLWMMNIGKEEKEEEATSETASDQNMDDEFQKSSGPKKICYYELLTATNNFEETQKLGQGGFGGVYKGYFRNSNSYAAVKRISANSKQGLKQYTAEVKIISQLRHRNLVKLAGWCHKKTDLLLIYEYMPNGSLDSHIFRGKSILSWQVRYSNIAQGLASALLYLQEECGKCVLHRDIKSSNIMLDSDFNAKLGDFGLARFVDSEKGSQTTVVAGTMGYLAPEYMHTGKARKESDIFSFGVVLLEIATGRKAIDYQDMEVQETIVEWVWQLYGLGNILAAADPKLCGVFDVQQMECLLVFGLWCANPDCRSRPSIRQVIKVLNFEAPLPVLSQSVPALMYLPWTTNELFFTVSSSLKATC* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3983 487 SUPERFAMILY Concanavalin A-like lectins/glucanases 9 202 IPR013320 -
Lja4g3983 487 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Lja4g3983 487 MobiDBLite consensus disorder prediction 142 161 - -
Lja4g3983 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Lja4g3983 487 ProSiteProfiles Protein kinase domain profile. 179 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3983 487 CDD STKc_IRAK 185 450 - -
Lja4g3983 487 SUPERFAMILY Protein kinase-like (PK-like) 163 465 IPR011009 -
Lja4g3983 487 Pfam Legume lectin domain 9 93 IPR001220 GO:0030246
Lja4g3983 487 Gene3D Transferase(Phosphotransferase) domain 1 256 467 - -
Lja4g3983 487 SMART serkin_6 179 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3983 487 Gene3D Phosphorylase Kinase; domain 1 164 255 - -
Lja4g3983 487 PANTHER LECTIN RECEPTOR KINASE 3 486 - -
Lja4g3983 487 Pfam Protein kinase domain 179 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3983 487 Gene3D - 2 105 - -
Lja4g3983 487 PANTHER - 3 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3983 Lja-Chr4 72921656 72924644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3983 23 467 Receptor kinase-like Gene Family AT5G10530 48.330 2.41e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja4g3983 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3983 - - cam:101492002 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3983 4 72921656 72924644 Lja4g3983 4 72921656 72924644 ECH