Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3980 ATGGCTCCTTTGCATATCAGTAATTTTCACACTCCAACTCTTCTATTCTACTATGCAATGGGAACTATTTTGATCCTCCAAATCACCCCTCCTGCAAACTCACTATCATTTAACCACCCCTACTTTAAGAATGGTGATGTCAATTGTGAGGGTGATTCTTCCATTTTGAAAGGAGCAATCCAAATCACTTCCAACACCATGGACCAAAACAACAATTACAGTGTTGGGAGAGTCACAAGTTATGCACAGATGCACCTGTGGGATGTGAACTCTGGGAAGCTCTCTGATTTCACCACCAAATTCTCCTTTGTTGTTTTTTCAGAAAAGAGTGATTATGGAGATGGAATGGCATTCATTATAGCAGATCCAAATCTCCCACTTGTGAAACATATTAAACAAGGAGGTGGTCTTGGAATTGTGGATGGCAAACAAGTGTTGAAGTCAACTCAACACTCATTTGTTGCAGTGGAGTTTGACACCTATAACAATGAAGAATGGGACCCTCCTAAACAAGGTACTCATGTAGGTTTGAATTTCAACTCTATGAAGTCTAGCATAACTAAGCCATGGTTGACAGATATTCAGAAAAGGAGAGTTTACAATTGCAGCATTCAGTACAATTCAAGCACTCTTGATTTAAGAGTTTCATTCACTATGTACAGTGATGATACTGATAAAGCAATTGTAGAACACATAGTATACAAGGTTGATTTAAGAGATCACTTACCAGAGTGGGTTACTTTTGGCTTCTCTGCAGCAACAGGAAGATTGTATGAGGTGCATACTTTGATATCATGGTCATTTAGTTCAACAGCTCTACAAATTCATGAAGACAGAAGTCAGATAACACCAATTGCAGCTGCACCAATCCCCAATCCTATTTCTGAAAAAGAAAACAAGATAGGATTGTTGGTGGGGCTTGGAATTGGTTCAGGTTTGGCTGTGAGTTTATCAGGACTGGTTTTTGCTTTATTATTGAAGAGGAAGAGAGAGAAAAAAGAAGATTATGGTTTTGATCTCAATGATGAATTCCAGAAGGATACTGGACCTAAAAGGTTTCCCTACAATAAATTAGTTAGTGCAACCAACAAATTTATAGAGAAATTGGGGCAAGGTGGTTTTGGTGGGGTGTATAAAGGTTATTTGAAGGATCTAAACTCCTATGTTGCTATCAAGAGGATTTCAAAAGATTCTAGACAAGGTGTACAAGAATATGCAACTGAAGTGAAGGTCATAAGCCAATTAAGACACAGGAATCTAGTACAACTCATTGGTTGGTGCCACAGAAAGAATGATTTCCTTCTCATATATGAGTTCATGCCAAATGGAAGCTTAGATTCCCATCTATATGGCAGCAAAAGCTTCTTGTCATGGAAAGTAAGGTACAACATAGCTCTTGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGGGACATTAAACCAAGCAACATCATGCTGGACTCATGTTTCAATGCAAAGCTTGGTGATTTTGGTTTAGCTAGGCTTGTGGATCATGAGAAAGGTTCACAAACAACATGTGTAGCTGGGACAAGGGGGTACATTGCCCCTGAATATTTCACCTCAGGTAAAGCTACTAAGGAGTCTGATATATACAGTTTTGGGGTTGTGTTGTTGGAGATAGCAAGTGGAAGGAAAGCAATTTACCAAGAAGAAAATGAGGGTCAGAAAACTGTGGTTGAATGGGTTTGGGAGCTCTATGGGTTGGGAAGATTCTTTGAAGCAGCTGATCCAAAGTTAAATGGGGTGTTTGATAAGGAGCAAATGGAACGTTTGGTGGTTGTTGGGCTTTGGTGTGCTCATCCAGATTATTCATTCAGGCCTTGTGTAAGGCAAGTGATTCAGGTGCTCAAATTTGAGTCTTGTTTTCCTATTCTTCCAGAAACCATGCCTGTCCCAACCTATCTTCCTCCCACAATGAAAGCACTTTTTCCTTCTTTTTCATCCACCTTTTGGACTTAA 2007 0.3976 MAPLHISNFHTPTLLFYYAMGTILILQITPPANSLSFNHPYFKNGDVNCEGDSSILKGAIQITSNTMDQNNNYSVGRVTSYAQMHLWDVNSGKLSDFTTKFSFVVFSEKSDYGDGMAFIIADPNLPLVKHIKQGGGLGIVDGKQVLKSTQHSFVAVEFDTYNNEEWDPPKQGTHVGLNFNSMKSSITKPWLTDIQKRRVYNCSIQYNSSTLDLRVSFTMYSDDTDKAIVEHIVYKVDLRDHLPEWVTFGFSAATGRLYEVHTLISWSFSSTALQIHEDRSQITPIAAAPIPNPISEKENKIGLLVGLGIGSGLAVSLSGLVFALLLKRKREKKEDYGFDLNDEFQKDTGPKRFPYNKLVSATNKFIEKLGQGGFGGVYKGYLKDLNSYVAIKRISKDSRQGVQEYATEVKVISQLRHRNLVQLIGWCHRKNDFLLIYEFMPNGSLDSHLYGSKSFLSWKVRYNIALGLASALLYLQEEWEQCVIHRDIKPSNIMLDSCFNAKLGDFGLARLVDHEKGSQTTCVAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIASGRKAIYQEENEGQKTVVEWVWELYGLGRFFEAADPKLNGVFDKEQMERLVVVGLWCAHPDYSFRPCVRQVIQVLKFESCFPILPETMPVPTYLPPTMKALFPSFSSTFWT* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3980 668 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Lja4g3980 668 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Lja4g3980 668 SUPERFAMILY Protein kinase-like (PK-like) 349 661 IPR011009 -
Lja4g3980 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Lja4g3980 668 SMART serkin_6 363 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3980 668 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 28 668 - -
Lja4g3980 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 280 IPR013320 -
Lja4g3980 668 Gene3D - 32 283 - -
Lja4g3980 668 ProSiteProfiles Protein kinase domain profile. 363 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3980 668 CDD STKc_IRAK 369 633 - -
Lja4g3980 668 CDD lectin_legume_LecRK_Arcelin_ConA 35 271 IPR001220 GO:0030246
Lja4g3980 668 Gene3D Phosphorylase Kinase; domain 1 350 439 - -
Lja4g3980 668 ProSitePatterns Legume lectins alpha-chain signature. 242 251 IPR000985 -
Lja4g3980 668 PANTHER - 28 668 - -
Lja4g3980 668 Pfam Legume lectin domain 34 278 IPR001220 GO:0030246
Lja4g3980 668 Pfam Protein kinase domain 365 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3980 668 Gene3D Transferase(Phosphotransferase) domain 1 440 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3980 Lja-Chr4 72914349 72916355 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3980 28 650 Receptor kinase-like Gene Family AT5G10530 45.383 3.52e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja4g3980 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3980 - - gmx:100780181 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3980 4 72914349 72916355 Lja4g3980 4 72914349 72916355 ECH