Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3979 ATGGGGAGAGGAAAGATTATCATTCGCAGGATTGATGATACATCTAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGTTGAAGAAAGCAAGAGAACTTTCTATTCTCTGTGATGCTCAAGTTGGACTCATGGTGTTCTCCAGCACTGGAAAGCTTTATGACTATGCAAGCACCAGCATGGAGTCAATCATTGAGCATTATAACAAACTAAAAGAGGACCATCCTCAACTAATGAGTTTTGCGTCAGAAATCAAGTTTTGGCAAAGAGAAGCGGCAAGCTTGAGGCAACAACTACAACATTTGCTTGAATGCCTCAGGCAATTGATGGGTCAAGAAGTTTCTGGTTTGGGTTTTAATGAGCTACGGCATCTAGAAAATCAACTGGAAATCAGCTTGAAGAACATTCGCATGAGAAAGGGTCAAATTTTTAGTGATGATATCAAAGATTTACACCAAAAGGGAAGCCTCAGTCATCAAGAAAATGAAGAACTTTATAAGAAGATAGACCTCATCAATAAGGAAAATGCAGAACTCAGGAAGGTTATAGAAGCAAGGCATGGAGAAGAAGAAAATGCACCATCCATTAATCATTCATATACTATCAGCAATGGATCAGATATACTTGAGCCAATCAGTCTCCAGCTAAGGCAGCTACAACCCCAATACAATGAACCAGCAACCAAAACAATGAATCTGGGGTTGGCTTTTCATTTGTGA 723 0.397 MGRGKIIIRRIDDTSSRQVTFSKRRKGLLKKARELSILCDAQVGLMVFSSTGKLYDYASTSMESIIEHYNKLKEDHPQLMSFASEIKFWQREAASLRQQLQHLLECLRQLMGQEVSGLGFNELRHLENQLEISLKNIRMRKGQIFSDDIKDLHQKGSLSHQENEELYKKIDLINKENAELRKVIEARHGEEENAPSINHSYTISNGSDILEPISLQLRQLQPQYNEPATKTMNLGLAFHL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3979 240 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Lja4g3979 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Lja4g3979 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g3979 240 Coils Coil 163 183 - -
Lja4g3979 240 Coils Coil 79 106 - -
Lja4g3979 240 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja4g3979 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Lja4g3979 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 239 - -
Lja4g3979 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g3979 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3979 Lja-Chr4 72897345 72907253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3979 1 240 MADS-box Gene Family AT2G14210 54.772 4.33e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g3979 K-box 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3979 K09264 - gmx:100808145 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3979 4 72897345 72907253 Lja6g3225 6 60690006 60702589 PCT