Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3973 ATGGAGAACTATCAATACCCAGCATCGTACCCAGATTCCGGCGACTCGTCGCCGCGGTCGAGGGAGATCGACTTCGAGAATCCGACGCCATGGGAGGACCAGCAGAGTCCACACAACTACAAAGCCAAGTTCCTCTGCAGCTACGGCGGGAAGATCCAGCCACGCACCCACGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGGAACACCAAGTTCCCAACGTTCCTCTCCAAGCTCGCCGCCCTCTGCGACGCTGCACCGCAAGAGCTCACCTTCAAGTACCAGCTCCCCGGCGAGGATCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCGAGCACTTGATGCATGAGTACGATCGCCTCTATCGGCCTGCTTCGAAACCCGTCAGGATGAGGCTCTTCCTCTTCTCTGCACCGAATCCGGGTCCTCTATCTCAACAACCCGACCCGCTTAAGCCACAACCCAACGTTGACTTCCTCTTTGGCCTCGAGAAGGGCGTCGTTCCTCCGCCTCAGCCTCCCTCCTTCGCCGCCGTCAAGTTCCACGATCCCGTGCCGGACCCCGTCGCGCTGAATCCAGAGTACCAGCCCCGTGTACCCGTTTCTGATCGGGTTATCGGGTCGGATAATGTCAACCCCATCGAGATTCAGAGGCAGTTTCAGCGGTTGCAGGTTGGGGAGAGTGATTATCGGAGGAGAAGTGAAGATGGGTACGCCGGAGGTTATGCTGCCGCGGCCGTGGCTTCCTCCGGCGGCGGAGGCGCAGGGGAGTATTACTCGCAGAAGATGCCGGAGAAAATCCCGCCGGCGAACTTGCAAAATCCTGGTGGTTACTGGCCGGAGAAGCAGTTTCCCGGAGAGGCTTTCCAGACGGCTGCCGGAGGAGGAGACCAGCCGGTTTACCTGATTCAGACGCAGGCGCCGGGAACGTTCTATCACGCGCCGGTGATGCGTCCTCCGACGACGCAAGGGTACTACGCGGTGCAGAGAATGGCTTCTGATGGCTACCGGGAACAGCCGGTGTATGGCGGCATGCCGCCGCAGAATGTGGGGTTCTCGTCTGCGGGTCCGGCGAGCTTGGCACCGGCGCAGCAGGTTAAGCCGTCGGGCTATGCGGAGGGGTATGGCGTGGTTAGGCCAACTGGGGTGTCGGATAATGTCGGTGGTGGTGCGTACGCGCAAGTGGCGTATGATAGTGCAAGTGGGAGACAGGTTTACTATACTGCGCAGGGTGGGGTTGTACACGCGCCACCGTATCAAGGAGTGGTGAATGCTGACGTGAGACAGGTTTCGTTGGGGCAGGATGGTAAAGTGGTAAACAAGGTTTCCCAAGGATCTGTGTGA 1371 0.5988 MENYQYPASYPDSGDSSPRSREIDFENPTPWEDQQSPHNYKAKFLCSYGGKIQPRTHDNQLSYVGGDTKILAVDRNTKFPTFLSKLAALCDAAPQELTFKYQLPGEDLDALISVTNDDDLEHLMHEYDRLYRPASKPVRMRLFLFSAPNPGPLSQQPDPLKPQPNVDFLFGLEKGVVPPPQPPSFAAVKFHDPVPDPVALNPEYQPRVPVSDRVIGSDNVNPIEIQRQFQRLQVGESDYRRRSEDGYAGGYAAAAVASSGGGGAGEYYSQKMPEKIPPANLQNPGGYWPEKQFPGEAFQTAAGGGDQPVYLIQTQAPGTFYHAPVMRPPTTQGYYAVQRMASDGYREQPVYGGMPPQNVGFSSAGPASLAPAQQVKPSGYAEGYGVVRPTGVSDNVGGGAYAQVAYDSASGRQVYYTAQGGVVHAPPYQGVVNADVRQVSLGQDGKVVNKVSQGSV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3973 456 CDD PB1_UP2 45 145 - -
Lja4g3973 456 Gene3D - 62 147 - -
Lja4g3973 456 PANTHER OS05G0427100 PROTEIN-RELATED 1 452 - -
Lja4g3973 456 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 452 - -
Lja4g3973 456 MobiDBLite consensus disorder prediction 1 36 - -
Lja4g3973 456 SUPERFAMILY CAD & PB1 domains 57 150 - -
Lja4g3973 456 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g3973 456 SMART PB1_new 56 147 IPR000270 GO:0005515
Lja4g3973 456 Pfam PB1 domain 57 146 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3973 Lja-Chr4 72780396 72781940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3973 40 148 MAP Kinase Kinase Kinase AT5G57610 47.706 6.96e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3973 - - adu:107480527 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3973 4 72780396 72781940 Lja6g3218 6 60636463 60638217 PCT